Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0771 ATGGTTTCGAGTAATCGAGCGACGAATTCTCATCAACAACAAGCACAGTCCTCGAACACGAACACGAACACGAACACGAGCCATTTGAGATCTCGCCGTACAGAGTCCGTTAGCAAAGCGATTGAGCAATACACCGCCGATGCTCGTCTTCACGCTGTGTTTGAGCAGTCAGGTGAGTCCGGTAAATCTTTCGACTATTCACAGTCTATTAGAACTTCGACACAATCCGTGCCGGAGAAGCAGATTACTGCTTATTTGTCAAGGATTCAAAGGGGTGGCCATATCCAGCCCTTTGGATGTATAATAGCCATAGATGAAGCTAGTTTTCGAGTTATTGCTTATAGTGAAAACTCTAGGGAATTGCTTGGTCTTACGCCTCAATCAGTCCCGAGTCTTGAAAAGCCTGAGATTCTCACGATTGGGACTGATGTGAGGAATTTGTTCACTTCTAATAGTGCGATTCTGCTCGAGAGGGCGTTTGGGGCTCGGGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTTTATGCTATTTTGCATAGGATTGATGTGGGGATTGTGATTGATTTGGAGGCTGCGAGAACGGAGGATCCTGCTCTTTCTATTGCTGGGGCAGTCCAATCGCAGAAGCTTGCGGTTCGGGCGATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTCAGAGTGTTAGGGAGCTTACTGGATATGATAGAGTTATGGTGTATAAATTTCACGAGGATGAGCATGGTGAGGTTGTGGCTGAGAGTAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGGGTTAGGATGATTGTTGATTGCCATGCTTCTTCAGTTCGTGTAATCCAGGATGCTGGGCTTATACAACCTCTTTGCTTAGTGGGTTCGACTCTTCGTGCTCCTCATGGCTGCCATGCTCAGTATATGGCTAATATGGGTTCCGTTGCTTCATTAGCAATGGCAGTTGTTATCAACGGTAATGACGACGATACTCTTGGTGGGCGAAACTCAACGAGGCTTTGGGGTTTGGTTGTATGCCACCATACTTCTGCTCGGTGTATTCCATTCCCACTCCGGTATGCTTGTGAGTTTCTAATGCAAGCCTTTGGACTTCAGTTGCATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGATTCTTCGTGATTCCCCTACCGGCATTGTTACGCAGAGTCCAAGCATCATGAATCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTGTGGGCATTACGCCAAGTGAAGCCCAAATAATGGATACTGTGGAATGGTTGCTGGCTTTCCATGGGGATTCAACTGGCTTAAGTACAGATAGCCTGGCTGATGCTGGATATCCAGGGGCTGCGTTGCTTGGTGATGCAGTTCGTGGAATGGCTGTTGCTTATATCACAAAAAGGGATTTTCTATTTTGGTTCCGGTCACACACAGCAAAAGAGATCAAGTGGGGTGGTGCAAAGCATCACCCACAGGATAAGGATGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCTCGTAGTTTACCGTGGGAAGCTGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGATTCATTTAAAGATGATGCCGCAATCGATTCAAAGGCAGTTGTGCACCCTCAACTAGGGGATCTTGATTTGCAAGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTAAGGTTGATTGAGACTGCTACTGCTCCTATCTTTGCTGTAGATGTTGATGGTCGTATCAATGGATGGAATGCTAAGTTAGCTGAGTTGACTGGGCTTGCAGTTGAGGAAGCTATGGGTAAATCCTTAGCGTGTGATCTTGTACATAAAGAATCCAAAGAAATAGTTGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGATAAAAACATAGAGATAAAAATGAGGACATTTGGGCCGGAAGATCAAAGGACGCCCATTTTTGTGGTTGTCAATGCTTGCTGTAGCAGGGACTACACTGATAATATAGTAGGGGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGATTATAAAGCAATTGTTCATAGTCCCAATCCTCTTATCCCTCCAATATTTGCTTCGGACGACAATACATGCTGCTCAGAGTGGAATACTGCTATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGATTGTAGGAGAGGTTTTTGGAAGTTGTTGTAGACTGAAGGGTTCTGATACATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGAGGGCAGGACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTTCAGGCTCTCTTGACAGCAAATAAGAGAATGAATATGGAGGGTCAGATTGTTGGTGCTTTCTGCTTCTTACAGATTCCCAGTCCTGAATTGCAACAAACTCTTGTAATGCAGAGGCAACAGGAGAACAGCCGGTTTGCGAGGATGAAAGAGCTAGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGCATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTTCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTAAAGATTATAGCAGATATGGATTTGGAAAGTATTGATGATGGTAAGATGGAGCTCGAGAAAGGGGAGTTCCTGTTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGTTACTACTCAGAGAAAGAAACTTACAGCTGATTCGTGATATACCAGAAGAAGTAAAAACTATGGCTGTATATGGCGATCAAGTGAGGATTCAACAGGTTTTAGCTGATTTTTTGATGAATATGGTGCGCTACGCGCCGTCTCCCGAAGGATGGGTAGAAATACGTGTCTGTCCATTCTTGAAGCAAAACTCAGAAGGACCTACTCTCTCACACACCGAATTCAGGTTTGTATGCCCTGGGGAAGGTCTACCACCTGAGTTGGTACAGGACATGTTTCACACAGGCAGATGGGTGACTCAAGAAGGATTAGGCTTAAGCATGTGCAGAAAGATTCTGAAGCTCATGAATGGTGAAGTCCAATACATCAGAGAGTCTGAAAGGTGCTATTTCTTGATCACTCTTGAACTCCCCTTGACGGAGAGTGGCCTAAGCGATGCCGGTTAG 3408 43.93 MVSSNRATNSHQQQAQSSNTNTNTNTSHLRSRRTESVSKAIEQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEKQITAYLSRIQRGGHIQPFGCIIAIDEASFRVIAYSENSRELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLERAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEAARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVQSVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASSVRVIQDAGLIQPLCLVGSTLRAPHGCHAQYMANMGSVASLAMAVVINGNDDDTLGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLHMELQLASQMSEKHVLRTQTLLCDMILRDSPTGIVTQSPSIMNLVKCDGAALYYQGKYYPVGITPSEAQIMDTVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVRGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPQDKDDGQRMHPRSSFKAFLEVVKSRSLPWEAAEMDAIHSLQLILRDSFKDDAAIDSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKLAELTGLAVEEAMGKSLACDLVHKESKEIVDKLVSRALKGEEDKNIEIKMRTFGPEDQRTPIFVVVNACCSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMIVGEVFGSCCRLKGSDTLTKFMIVLHSAIGGQDNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIPSPELQQTLVMQRQQENSRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIADMDLESIDDGKMELEKGEFLLGSVINAVVSQVMLLLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLMNMVRYAPSPEGWVEIRVCPFLKQNSEGPTLSHTEFRFVCPGEGLPPELVQDMFHTGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTESGLSDAG 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4689706 4696546 - Sed0011961.1 Sed12g0771 731727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0771 1135 SMART HisKA_10 901 965 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 526 545 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 648 663 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 722 739 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 333 354 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 148 170 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 248 267 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 441 461 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 629 645 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 559 577 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 PRINTS Phytochrome signature 742 762 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 FunFam Phytochrome 964 1130 - -
Sed12g0771 1135 Gene3D - 883 963 - -
Sed12g0771 1135 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Sed12g0771 1135 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 976 1125 IPR036890 -
Sed12g0771 1135 CDD HATPase_Phy-like 1012 1124 IPR044767 -
Sed12g0771 1135 Gene3D - 964 1129 IPR036890 -
Sed12g0771 1135 PANTHER OS08G0260000 PROTEIN 19 1005 - -
Sed12g0771 1135 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 203 IPR035965 -
Sed12g0771 1135 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 401 IPR016132 -
Sed12g0771 1135 Pfam GAF domain 234 408 IPR003018 GO:0005515(InterPro)
Sed12g0771 1135 CDD PAS 637 744 IPR000014 -
Sed12g0771 1135 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 890 957 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed12g0771 1135 Pfam PAS fold 84 200 IPR013654 GO:0006355(InterPro)
Sed12g0771 1135 Pfam Phytochrome region 424 598 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0771 1135 ProSiteProfiles Histidine kinase domain profile. 908 1128 IPR005467 -
Sed12g0771 1135 SMART gaf_1 233 421 IPR003018 GO:0005515(InterPro)
Sed12g0771 1135 FunFam Phytochrome 773 881 - -
Sed12g0771 1135 CDD PAS 771 879 IPR000014 -
Sed12g0771 1135 CDD HisKA 901 957 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed12g0771 1135 SUPERFAMILY PYP-like sensor domain (PAS domain) 774 878 IPR035965 -
Sed12g0771 1135 MobiDBLite consensus disorder prediction 1 31 - -
Sed12g0771 1135 SMART HKATPase_4 1013 1128 IPR003594 -
Sed12g0771 1135 Pfam PAS fold 629 744 IPR013767 GO:0006355(InterPro)
Sed12g0771 1135 Pfam PAS fold 760 879 IPR013767 GO:0006355(InterPro)
Sed12g0771 1135 Gene3D - 214 572 IPR029016 -
Sed12g0771 1135 SUPERFAMILY PYP-like sensor domain (PAS domain) 633 741 IPR035965 -
Sed12g0771 1135 SUPERFAMILY GAF domain-like 419 596 - -
Sed12g0771 1135 SMART pas_2 628 695 IPR000014 -
Sed12g0771 1135 SMART pas_2 759 829 IPR000014 -
Sed12g0771 1135 Gene3D PAS domain 624 748 - -
Sed12g0771 1135 FunFam Phytochrome 882 963 - -
Sed12g0771 1135 Gene3D PAS domain 773 882 - -
Sed12g0771 1135 SUPERFAMILY GAF domain-like 213 408 - -
Sed12g0771 1135 ProSiteProfiles PAS repeat profile. 626 697 IPR000014 -
Sed12g0771 1135 MobiDBLite consensus disorder prediction 1 37 - -
Sed12g0771 1135 Gene3D PAS domain 88 336 - -
Sed12g0771 1135 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1013 1126 IPR003594 -
Sed12g0771 1135 Gene3D - 416 589 IPR043150 -
Sed12g0771 1135 FunFam Phytochrome 416 545 - -
Sed12g0771 1135 NCBIfam PAS domain S-box protein 633 745 IPR000014 -
Sed12g0771 1135 Pfam His Kinase A (phospho-acceptor) domain 902 965 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed12g0771 1135 FunFam Phytochrome 622 754 - -
Sed12g0771 1135 ProSiteProfiles PAS repeat profile. 760 812 IPR000014 -
Sed12g0771 1135 PIRSF Phytochrome_conventional 16 1133 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0858 Sed-Chr11:20293608 Sed12g0771 Sed-Chr12:4689706 0.00E+00 dispersed
Sed12g0771 Sed-Chr12:4689706 Sed12g0772 Sed-Chr12:4689706 0.00E+00 tandem
Sed12g0771 Sed-Chr12:4689706 Sed02g1136 Sed-Chr2:48568134 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0771 K12121 - csv:101212197 2085.46