Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0772 ATGGTTTCGAGTAATCGAGCGACGAATTCTCATCAACAACAAGCACAGTCCTCGAACACGAACACGAACACGAACACGAGCCATTTGAGATCTCGCCGTACAGAGTCCGTTAGCAAAGCGATTGAGCAATACACCGCCGATGCTCGTCTTCACGCTGTGTTTGAGCAGTCAGGTGAGTCCGGTAAATCTTTCGACTATTCACAGTCTATTAGAACTTCGACACAATCCGTGCCGGAGAAGCAGATTACTGCTTATTTGTCAAGGATTCAAAGGGGTGGCCATATCCAGCCCTTTGGATGTATAATAGCCATAGATGAAGCTAGTTTTCGAGTTATTGCTTATAGTGAAAACTCTAGGGAATTGCTTGGTCTTACGCCTCAATCAGTCCCGAGTCTTGAAAAGCCTGAGATTCTCACGATTGGGACTGATGTGAGGAATTTGTTCACTTCTAATAGTGCGATTCTGCTCGAGAGGGCGTTTGGGGCTCGGGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTTTATGCTATTTTGCATAGGATTGATGTGGGGATTGTGATTGATTTGGAGGCTGCGAGAACGGAGGATCCTGCTCTTTCTATTGCTGGGGCAGTCCAATCGCAGAAGCTTGCGGTTCGGGCGATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTCAGAGTGTTAGGGAGCTTACTGGATATGATAGAGTTATGGTGTATAAATTTCACGAGGATGAGCATGGTGAGGTTGTGGCTGAGAGTAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGGGTTAGGATGATTGTTGATTGCCATGCTTCTTCAGTTCGTGTAATCCAGGATGCTGGGCTTATACAACCTCTTTGCTTAGTGGGTTCGACTCTTCGTGCTCCTCATGGCTGCCATGCTCAGTATATGGCTAATATGGGTTCCGTTGCTTCATTAGCAATGGCAGTTGTTATCAACGGTAATGACGACGATACTCTTGGTGGGCGAAACTCAACGAGGCTTTGGGGTTTGGTTGTATGCCACCATACTTCTGCTCGGTGTATTCCATTCCCACTCCGGTATGCTTGTGAGTTTCTAATGCAAGCCTTTGGACTTCAGTTGCATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGATTCTTCGTGATTCCCCTACCGGCATTGTTACGCAGAGTCCAAGCATCATGAATCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTGTGGGCATTACGCCAAGTGAAGCCCAAATAATGGATACTGTGGAATGGTTGCTGGCTTTCCATGGGGATTCAACTGGCTTAAGTACAGATAGCCTGGCTGATGCTGGATATCCAGGGGCTGCGTTGCTTGGTGATGCAGTTCGTGGAATGGCTGTTGCTTATATCACAAAAAGGGATTTTCTATTTTGGTTCCGGTCACACACAGCAAAAGAGATCAAGTGGGGTGGTGCAAAGCATCACCCACAGGATAAGGATGATGGTCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCTCGTAGTTTACCGTGGGAAGCTGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGATTCATTTAAAGATGATGCCGCAATCGATTCAAAGGCAGTTGTGCACCCTCAACTAGGGGATCTTGATTTGCAAGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTAAGGTTGATTGAGACTGCTACTGCTCCTATCTTTGCTGTAGATGTTGATGGTCGTATCAATGGATGGAATGCTAAGTTAGCTGAGTTGACTGGGCTTGCAGTTGAGGAAGCTATGGGTAAATCCTTAGCGTGTGATCTTGTACATAAAGAATCCAAAGAAATAGTTGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGATAAAAACATAGAGATAAAAATGAGGACATTTGGGCCGGAAGATCAAAGGACGCCCATTTTTGTGGTTGTCAATGCTTGCTGTAGCAGGGACTACACTGATAATATAGTAGGGGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGATTATAAAGCAATTGTTCATAGTCCCAATCCTCTTATCCCTCCAATATTTGCTTCGGACGACAATACATGCTGCTCAGAGTGGAATACTGCTATGGAAAAGCTCACTGGATGGTCCAGAGAGGACATAATTGGAAAAATGATTGTAGGAGAGGTTTTTGGAAGTTGTTGTAGACTGAAGGGTTCTGATACATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGAGGGCAGGACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTTCAGGCTCTCTTGACAGCAAATAAGAGAATGAATATGGAGGGTCAGATTGTTGGTGCTTTCTGCTTCTTACAGATTCCCAGTCCTGAATTGCAACAAACTCTTGTAATGCAGAGGCAACAGGAGAACAGCCGGTTTGCGAGGATGAAAGAGCTAGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGCATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTTCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTAAAGATTATAGCAGATATGGATTTGGAAAGTATTGATGATGGTAAGATGGAGCTCGAGAAAGGGGAGTTCCTGTTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGTTACTACTCAGAGAAAGAAACTTACAGCTGATTCGTGATATACCAGAAGAAGTAAAAACTATGGCTGTATATGGCGATCAAGTGAGGATTCAACAGGTTTTAGCTGATTTTTTGATGAATATGGTGCGCTACGCGCCGTCTCCCGAAGGATGGGTAGAAATACGTGTCTGTCCATTCTTGAAGCAAAACTCAGAAGGACCTACTCTCTCACACACCGAATTCAGGTACTTAATGTTCAATCATTCTTCACTGTACATTTGA 3225 43.5 MVSSNRATNSHQQQAQSSNTNTNTNTSHLRSRRTESVSKAIEQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEKQITAYLSRIQRGGHIQPFGCIIAIDEASFRVIAYSENSRELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLERAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEAARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVQSVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASSVRVIQDAGLIQPLCLVGSTLRAPHGCHAQYMANMGSVASLAMAVVINGNDDDTLGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLHMELQLASQMSEKHVLRTQTLLCDMILRDSPTGIVTQSPSIMNLVKCDGAALYYQGKYYPVGITPSEAQIMDTVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVRGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPQDKDDGQRMHPRSSFKAFLEVVKSRSLPWEAAEMDAIHSLQLILRDSFKDDAAIDSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKLAELTGLAVEEAMGKSLACDLVHKESKEIVDKLVSRALKGEEDKNIEIKMRTFGPEDQRTPIFVVVNACCSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMIVGEVFGSCCRLKGSDTLTKFMIVLHSAIGGQDNEKFPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIPSPELQQTLVMQRQQENSRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIADMDLESIDDGKMELEKGEFLLGSVINAVVSQVMLLLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLMNMVRYAPSPEGWVEIRVCPFLKQNSEGPTLSHTEFRYLMFNHSSLYI 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4689706 4696546 - Sed0011961.2 Sed12g0772 731728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0772 1074 SMART HisKA_10 901 965 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed12g0772 1074 NCBIfam PAS domain S-box protein 633 745 IPR000014 -
Sed12g0772 1074 Gene3D PAS domain 773 882 - -
Sed12g0772 1074 Gene3D - 214 572 IPR029016 -
Sed12g0772 1074 Gene3D - 883 963 - -
Sed12g0772 1074 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Sed12g0772 1074 SUPERFAMILY PYP-like sensor domain (PAS domain) 89 203 IPR035965 -
Sed12g0772 1074 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 401 IPR016132 -
Sed12g0772 1074 CDD PAS 637 744 IPR000014 -
Sed12g0772 1074 SUPERFAMILY PYP-like sensor domain (PAS domain) 774 878 IPR035965 -
Sed12g0772 1074 Gene3D - 964 1064 IPR036890 -
Sed12g0772 1074 PRINTS Phytochrome signature 333 354 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 PRINTS Phytochrome signature 526 545 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 PRINTS Phytochrome signature 148 170 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 PRINTS Phytochrome signature 248 267 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 PRINTS Phytochrome signature 722 739 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 PRINTS Phytochrome signature 742 762 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 PRINTS Phytochrome signature 559 577 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 PRINTS Phytochrome signature 648 663 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 PRINTS Phytochrome signature 441 461 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 PRINTS Phytochrome signature 629 645 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 ProSiteProfiles Histidine kinase domain profile. 908 1044 IPR005467 -
Sed12g0772 1074 SUPERFAMILY GAF domain-like 213 408 - -
Sed12g0772 1074 PANTHER OS08G0260000 PROTEIN 19 1005 - -
Sed12g0772 1074 SMART gaf_1 233 421 IPR003018 GO:0005515(InterPro)
Sed12g0772 1074 CDD PAS 771 879 IPR000014 -
Sed12g0772 1074 CDD HisKA 901 957 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed12g0772 1074 Pfam Phytochrome region 424 598 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed12g0772 1074 Pfam PAS fold 629 744 IPR013767 GO:0006355(InterPro)
Sed12g0772 1074 Pfam PAS fold 760 879 IPR013767 GO:0006355(InterPro)
Sed12g0772 1074 MobiDBLite consensus disorder prediction 1 31 - -
Sed12g0772 1074 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1044 IPR036890 -
Sed12g0772 1074 SMART pas_2 628 695 IPR000014 -
Sed12g0772 1074 SMART pas_2 759 829 IPR000014 -
Sed12g0772 1074 SUPERFAMILY GAF domain-like 419 596 - -
Sed12g0772 1074 Gene3D PAS domain 624 748 - -
Sed12g0772 1074 SUPERFAMILY PYP-like sensor domain (PAS domain) 633 741 IPR035965 -
Sed12g0772 1074 ProSiteProfiles PAS repeat profile. 626 697 IPR000014 -
Sed12g0772 1074 MobiDBLite consensus disorder prediction 1 37 - -
Sed12g0772 1074 FunFam Phytochrome 773 881 - -
Sed12g0772 1074 Gene3D PAS domain 88 336 - -
Sed12g0772 1074 Gene3D - 416 589 IPR043150 -
Sed12g0772 1074 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 890 957 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed12g0772 1074 FunFam Phytochrome 882 963 - -
Sed12g0772 1074 Pfam GAF domain 234 408 IPR003018 GO:0005515(InterPro)
Sed12g0772 1074 Pfam PAS fold 84 200 IPR013654 GO:0006355(InterPro)
Sed12g0772 1074 FunFam Phytochrome 622 754 - -
Sed12g0772 1074 FunFam Phytochrome 416 545 - -
Sed12g0772 1074 Pfam His Kinase A (phospho-acceptor) domain 902 965 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed12g0772 1074 ProSiteProfiles PAS repeat profile. 760 812 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0772 K12121 - - csv:101212197 1946.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1136 Sed-Chr2:48568134 Sed12g0772 Sed-Chr12:4689706 0.00E+00 dispersed
Sed12g0771 Sed-Chr12:4689706 Sed12g0772 Sed-Chr12:4689706 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0961 . 16 1220 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1455.7
Sed04g0960 . 5 1194 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1454.9
Sed03g1085 . 23 986 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1320.4
Sed06g0270 . 36 1011 Histidine Kinase Gene Family AT2G01830 70.3 0.0e+00 1312.4
Sed06g0268 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed06g0269 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed07g0081 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed07g0082 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed05g2083 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed05g2084 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed09g0384 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed09g0383 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed05g0964 . 302 1249 Histidine Kinase Gene Family AT2G01830 51.5 2.7e-265 912.9
Sed01g0554 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0555 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0556 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0557 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed13g1937 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed13g1938 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed05g1812 . 1 986 Histidine Kinase Gene Family AT5G10720 57.1 1.7e-287 986.5
Sed13g1939 . 1 899 Histidine Kinase Gene Family AT5G10720 57.7 4.7e-258 888.6
Sed11g0823 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0824 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0858 . 15 1114 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1598.6
Sed05g2127 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed05g2128 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed02g1136 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1194.9
Sed12g0771 . 31 1124 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1178.7
Sed12g0772 . 31 1035 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1125.9
Sed12g0772 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1640.2
Sed12g0771 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1639.0
Sed02g1136 . 13 1061 Histidine Kinase Gene Family AT2G18790 77.4 0.0e+00 1634.0
Sed01g2201 . 7 1049 Histidine Kinase Gene Family AT2G18790 58.9 0.0e+00 1227.6
Sed01g2202 . 7 951 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1142.9
Sed11g0823 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed11g0824 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed05g2127 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed05g2128 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed11g0858 . 19 1047 Histidine Kinase Gene Family AT2G18790 51.4 1.4e-307 1053.5
Sed05g2127 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed05g2128 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed12g0771 . 31 1126 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1139.8
Sed02g1136 . 27 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1132.1
Sed11g0823 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed11g0824 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed12g0772 . 31 1038 Histidine Kinase Gene Family AT5G35840 53.4 0.0e+00 1092.8
Sed02g1136 . 3 1122 Histidine Kinase Gene Family AT4G16250 74.9 0.0e+00 1691.4
Sed12g0771 . 34 1126 Histidine Kinase Gene Family AT4G16250 75.5 0.0e+00 1681.8
Sed12g0772 . 34 1063 Histidine Kinase Gene Family AT4G16250 75.6 0.0e+00 1584.3
Sed01g2201 . 30 1110 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1267.7
Sed01g2202 . 30 951 Histidine Kinase Gene Family AT4G16250 59.8 0.0e+00 1129.0
Sed11g0823 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed11g0824 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed05g2127 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed05g2128 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed11g0858 . 13 1112 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1090.5
Sed01g2201 . 13 1124 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1355.5
Sed02g1136 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1274.6
Sed12g0771 . 43 1124 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1261.1
Sed01g2202 . 13 951 Histidine Kinase Gene Family AT4G18130 64.3 0.0e+00 1198.3
Sed12g0772 . 43 1065 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42