Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0779 ATGAAGTATTCTTTGTTTCCAAGTTCTATGCCTAATATGGCTCTTCGAAAGTTTGTTTGTGGTGATACACCTTCAATTAACTTGAAACATTCAAGTTTCTCCATGAAGGTGCATGAGCAAACTCAATTTGAAGAACTTGAGTCTAACCCGATGTCGGAGCCTGATGTAGAAATTGACCTTAGAGAAGTTTATTTTCTTATCATGCACTTTCTTTCATCTGGGCCATGCCGTAGAACTTGTGGGCTGCTTTGGGATGAGCTGTTTGAACATCAGCTCTTACCTCGACGATATCATGCTTGGTATTCAAGAAATGGGATGCATAGTGGGCATGAAAATGATGATGGCTTGTCATTTCCATTAAGTTACCAACACTTAGTCGAGAGGTATCCGCATGTTGATAAGGACCACCTGATAAAACTTCTGAAGCAATTGATCCTTAACAAGGCCCCTCCATCTAGAGGCATGAATGGAGGAATTGCTCCAAATGCAGCTGACGTGCCTACTTTATTGGGGACAGGCACATTTTCACTTCTGAGCTATGATAAACATGAAGTAACCGGTCATGGTCCCCCAGCACACATGCGTTGGCCTCATATGAAAGCTGATTCTGTTCGTGGATTAAGTTTGAGAGAAATTGGAGGTGGTTTCTCCCGACATCAGCGTGCACCTGCTGTACGTGCAGCTTGTTATGCAATTGCTAAACCAGCAACAATGGTACAGAAAATGCAAAACATAAAGAGGCTACGAGGGCATCGAAATGCTGTCTATTGTGGTAGCTTTCTATCATAA 789 42.46 MKYSLFPSSMPNMALRKFVCGDTPSINLKHSSFSMKVHEQTQFEELESNPMSEPDVEIDLREVYFLIMHFLSSGPCRRTCGLLWDELFEHQLLPRRYHAWYSRNGMHSGHENDDGLSFPLSYQHLVERYPHVDKDHLIKLLKQLILNKAPPSRGMNGGIAPNAADVPTLLGTGTFSLLSYDKHEVTGHGPPAHMRWPHMKADSVRGLSLREIGGGFSRHQRAPAVRAACYAIAKPATMVQKMQNIKRLRGHRNAVYCGSFLS 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4752689 4754901 + Sed0019830.1 Sed12g0779 731735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0779 262 PANTHER WD REPEAT DOMAIN 9 36 259 IPR052060 GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0007010(PANTHER)|GO:0008360(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0779 K11797 - - csv:101214610 452.595
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g84 . . . . . . . . . . Cma06g01559 Cma14g01594 Car06g01323 Car14g01407 Sed12g0779 Cpe08g00155 Cpe03g01333 Bhi01g01082 Tan10g1069 Cmetu06g1713 . Hepe05g1390 . Lcy11g1346 . . . . . . . . . Cone7ag0105 Cone4ag0108 Lsi05g01586 . . Cme06g00781 Blo02g00479 Blo07g00153 Bda11g00507 Bda13g00214 . Bpe13g00691 Bma02g00927 . . Cmo06g01556 Cmo14g01626 . . . . . . . . . . . . . Cla05g00697 Cam05g0765 Cec05g0774 . . Cmu05g0720 . . Csa03g01511 Chy06g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015992 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 1 1 0 0 1 1 0 9