Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0790 ATGACGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATCTCTGGCAAGATCTCCGGCGGGGTTTCGTCGGAGGAGAGTCAAGTCAACGAGCAGAACAAGAAGACCTGTGCTGACTGCGGCACTTCGAAAACCCCTTTGTGGAGAGGCGGACCGGCCGGTCCAAAGTCTCTTTGCAATGCTTGTGGGATTAGAAGTAGGAAGAAGAGGAGGGCAATTTTGGGATTAAGTAAAGGAGTTGTTGAGGATAAGAAGAACAAAAGAAGCAATACTATTAGCAATAGTAGTAAGTTGAGAGATTCTTTGAAACAGAGGCTTTTGGATTTAGGAAGAGAAGTTTTGATGCAAAGATCTACTGTGGAGAGGCAAAGGAAGAAGAAATTGGGAGAAGAAGAACAAGCTGCTGTGTTGTTAATGGCTCTTTCATATGGCTCTGTTTATGCTTAA 450 45.11 MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRSTVERQRKKKLGEEEQAAVLLMALSYGSVYA 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4844459 4845910 + Sed0006924.1 Sed12g0790 731746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0790 149 CDD ZnF_GATA 37 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 MobiDBLite consensus disorder prediction 1 53 - -
Sed12g0790 149 Pfam GATA zinc finger 38 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 ProSitePatterns GATA-type zinc finger domain. 38 63 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 PANTHER OS01G0976800 PROTEIN 24 149 - -
Sed12g0790 149 SMART GATA_3 32 83 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 72 - -
Sed12g0790 149 ProSiteProfiles GATA-type zinc finger domain profile. 32 68 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 MobiDBLite consensus disorder prediction 17 41 - -
Sed12g0790 149 Gene3D - 32 134 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1148 Sed-Chr2:48646764 Sed12g0790 Sed-Chr12:4844459 4.80E-58 dispersed
Sed04g0420 Sed-Chr4:3077007 Sed12g0790 Sed-Chr12:4844459 2.50E-21 dispersed
Sed12g0790 Sed-Chr12:4844459 Sed13g1857 Sed-Chr13:23545646 4.40E-12 dispersed
Sed12g0790 Sed-Chr12:4844459 Sed12g0791 Sed-Chr12:4844459 1.80E-42 tandem
Sed12g0790 Sed-Chr12:4844459 Sed02g1147 Sed-Chr2:48646764 1.20E-65 wgd
Sed12g0790 Sed-Chr12:4844459 Sed04g1766 Sed-Chr4:32293720 2.80E-19 wgd
Sed12g0790 Sed-Chr12:4844459 Sed09g0269 Sed-Chr9:2160221 2.60E-25 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1471 . 71 348 C2C2-Gata Transcription Factor Family AT5G25830 53.9 1.2e-67 254.6
Sed12g0790 . 3 149 C2C2-Gata Transcription Factor Family AT3G06740 58.4 6.7e-37 151.4
Sed06g2170 . 96 263 C2C2-Gata Transcription Factor Family AT2G45050 51.3 2.2e-43 173.7
Sed07g1682 . 103 275 C2C2-Gata Transcription Factor Family AT4G36240 50.3 3.0e-39 159.8
Sed04g1664 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.8 2.3e-137 486.9
Sed01g4052 . 1 513 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.4e-129 461.1
Sed05g1020 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1021 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1020 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
Sed05g1021 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001736 5 2 2 2 4 2 3 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 4 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40141 PF00320 GATA 8.90E-17 CL0167 Sed TF