Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0790 | ATGACGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATCTCTGGCAAGATCTCCGGCGGGGTTTCGTCGGAGGAGAGTCAAGTCAACGAGCAGAACAAGAAGACCTGTGCTGACTGCGGCACTTCGAAAACCCCTTTGTGGAGAGGCGGACCGGCCGGTCCAAAGTCTCTTTGCAATGCTTGTGGGATTAGAAGTAGGAAGAAGAGGAGGGCAATTTTGGGATTAAGTAAAGGAGTTGTTGAGGATAAGAAGAACAAAAGAAGCAATACTATTAGCAATAGTAGTAAGTTGAGAGATTCTTTGAAACAGAGGCTTTTGGATTTAGGAAGAGAAGTTTTGATGCAAAGATCTACTGTGGAGAGGCAAAGGAAGAAGAAATTGGGAGAAGAAGAACAAGCTGCTGTGTTGTTAATGGCTCTTTCATATGGCTCTGTTTATGCTTAA | 450 | 45.11 | MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRSTVERQRKKKLGEEEQAAVLLMALSYGSVYA | 149 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4844459 | 4845910 | + | Sed0006924.1 | Sed12g0790 | 731746 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0790 | 149 | CDD | ZnF_GATA | 37 | 72 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed12g0790 | 149 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Sed12g0790 | 149 | Pfam | GATA zinc finger | 38 | 72 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed12g0790 | 149 | ProSitePatterns | GATA-type zinc finger domain. | 38 | 63 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed12g0790 | 149 | PANTHER | OS01G0976800 PROTEIN | 24 | 149 | - | - | |
Sed12g0790 | 149 | SMART | GATA_3 | 32 | 83 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed12g0790 | 149 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 31 | 72 | - | - | |
Sed12g0790 | 149 | ProSiteProfiles | GATA-type zinc finger domain profile. | 32 | 68 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed12g0790 | 149 | MobiDBLite | consensus disorder prediction | 17 | 41 | - | - | |
Sed12g0790 | 149 | Gene3D | - | 32 | 134 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1148 | Sed-Chr2:48646764 | Sed12g0790 | Sed-Chr12:4844459 | 4.80E-58 | dispersed | |
Sed04g0420 | Sed-Chr4:3077007 | Sed12g0790 | Sed-Chr12:4844459 | 2.50E-21 | dispersed | |
Sed12g0790 | Sed-Chr12:4844459 | Sed13g1857 | Sed-Chr13:23545646 | 4.40E-12 | dispersed | |
Sed12g0790 | Sed-Chr12:4844459 | Sed12g0791 | Sed-Chr12:4844459 | 1.80E-42 | tandem | |
Sed12g0790 | Sed-Chr12:4844459 | Sed02g1147 | Sed-Chr2:48646764 | 1.20E-65 | wgd | |
Sed12g0790 | Sed-Chr12:4844459 | Sed04g1766 | Sed-Chr4:32293720 | 2.80E-19 | wgd | |
Sed12g0790 | Sed-Chr12:4844459 | Sed09g0269 | Sed-Chr9:2160221 | 2.60E-25 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40141 | PF00320 | GATA | 8.90E-17 | CL0167 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0790 | - | - | - | 0.0 |