Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0790 ATGACGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATCTCTGGCAAGATCTCCGGCGGGGTTTCGTCGGAGGAGAGTCAAGTCAACGAGCAGAACAAGAAGACCTGTGCTGACTGCGGCACTTCGAAAACCCCTTTGTGGAGAGGCGGACCGGCCGGTCCAAAGTCTCTTTGCAATGCTTGTGGGATTAGAAGTAGGAAGAAGAGGAGGGCAATTTTGGGATTAAGTAAAGGAGTTGTTGAGGATAAGAAGAACAAAAGAAGCAATACTATTAGCAATAGTAGTAAGTTGAGAGATTCTTTGAAACAGAGGCTTTTGGATTTAGGAAGAGAAGTTTTGATGCAAAGATCTACTGTGGAGAGGCAAAGGAAGAAGAAATTGGGAGAAGAAGAACAAGCTGCTGTGTTGTTAATGGCTCTTTCATATGGCTCTGTTTATGCTTAA 450 45.11 MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRSTVERQRKKKLGEEEQAAVLLMALSYGSVYA 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4844459 4845910 + Sed0006924.1 Sed12g0790 731746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0790 149 CDD ZnF_GATA 37 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 MobiDBLite consensus disorder prediction 1 53 - -
Sed12g0790 149 Pfam GATA zinc finger 38 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 ProSitePatterns GATA-type zinc finger domain. 38 63 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 PANTHER OS01G0976800 PROTEIN 24 149 - -
Sed12g0790 149 SMART GATA_3 32 83 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 72 - -
Sed12g0790 149 ProSiteProfiles GATA-type zinc finger domain profile. 32 68 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0790 149 MobiDBLite consensus disorder prediction 17 41 - -
Sed12g0790 149 Gene3D - 32 134 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1148 Sed-Chr2:48646764 Sed12g0790 Sed-Chr12:4844459 4.80E-58 dispersed
Sed04g0420 Sed-Chr4:3077007 Sed12g0790 Sed-Chr12:4844459 2.50E-21 dispersed
Sed12g0790 Sed-Chr12:4844459 Sed13g1857 Sed-Chr13:23545646 4.40E-12 dispersed
Sed12g0790 Sed-Chr12:4844459 Sed12g0791 Sed-Chr12:4844459 1.80E-42 tandem
Sed12g0790 Sed-Chr12:4844459 Sed02g1147 Sed-Chr2:48646764 1.20E-65 wgd
Sed12g0790 Sed-Chr12:4844459 Sed04g1766 Sed-Chr4:32293720 2.80E-19 wgd
Sed12g0790 Sed-Chr12:4844459 Sed09g0269 Sed-Chr9:2160221 2.60E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40141 PF00320 GATA 8.90E-17 CL0167 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0790 - - - 0.0