Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0793 ATGGCCGATCTGATCATCCTCTTCCTGATCTTCGCCGCCATACCCTTTTCCATTTCTCAGCCAACGATCCAAGCGCCGCCGCCGCCGGCCGCCGATTCCTGCAACGACATCTTCATATCCTACACCTTCAACCAAGGAACCAAGCTTCCCCCAAATCTCACTGACCGAGCCCAACAGCCCTTCCGATTCGAGTCAACTCTCTCGATTCTCAACAACGGCCTTTCCGAGCTCAAATCCTGGAGGGTTTTTGTGGGGTTTCAGCATAATGAGTTCTTGGTCTCTGCCGCCGGCGCCGTCCTCTTTGATGGGGTTTCCGTGCCGGGAAAGGTCGGTAATGGGACTGTGTTTGCTGGGTTTCCGGTGACGGATTTGAAGACGGCGGTTGAAACTGCTGGAGATTTGACTCAGATGCAAGTCCAGGTTAAATTGGTTGGGACCCAATTTGGAGTTGCGCCTCCCAATAGTCCTATGCCTGCGAATATTTCTCTTGCTAATGATGGGTTTTTATGCCCTAGGCCAACTCTTCGAGGAAAGAGTGAAATGAACGTTTGTTGCAAACCCGATCCACATGTTAAAACAAACATCACAACTAGTGGAGAGTTCTTGCCTCGCCGAAATGGCGATCTAACAATCATGTATGATGTGACAAGGACCTATGATTCAAGTTATTGGGCACAAGTCACAATCTCTAACCATAATCCTCTTGGTCGTCTTGACTATTGGAAATTGAGTTGGGAATGGATGAGGGATGAGTTTATCTATTCGATGAAAGGGGCTCATCCTTCTGTTGTTGATTCTACTGATTGCATTTTCGGTAGACAAGGTGCTTATTATCGCGAATTAGACTTTTCCAATGTATTAAGTTGCGAAAGAAAGCCAACTATTGTTGATTTGCCTCCAACTAAGGCCAACGACACCACTCTCGGGTTGGTCCCTTTTTGCTGTCGTAATGGGACTATCTTGCCGTCTCATATGGACCCGACTAAGTCAATTTCTGCATTTCAGATGCAAGTTTTTAAAATGCCACCTGATCTCAATAGATCCCAGATTACACCACCTCAGAATTGGAAGATCAGTGGCCTTCTCAACCCCTCATATATATGTGGTGTTCCAGTGAGAGTTAGTCCTAGTGAATTTCCGGACGCAAGTGGTTTACTGTTGAATTCGACTGCAGTGGCTAGCTGGCAGGTTGTTTGTAATATAACACACGTCAAGGATGACACGCCGAAGTGCTGCGTTTCGTTTTCGGCTTTCTACAATGATTCTGTGGTTCCGTGCGGAACGTGTGCTTGTGGATGTTCGCATAACTCTGGCCGTACATGTAATGCAACCTCCCCTGCAATGCTCCTCCCACCTGAAGCCCTTCTTGTTCCCTTTGAGAATAGGACTACCCTGGCTGTTGCTTGGGCTGGTCTTAAACATTACCCGATTCCTAACCCAATGCCTTGTGCGGATAACTGCGGTGTCAGTATCAATTGGCATTTGTATACCGATTATAGAGATGGATGGAGTGCAAGGATAACTCTCTTCAACTGGGACGAAGTGAATTTTGCAGATTGGTTTGCTGCAGTTGAGATGAAGAAAGCAGCACCCGGTTTCCAGGCAATGTACTCGTTCAATGCAACCACCTTGGAATTGGATGGTTCCAATAATACGATCTTTATGCAGGGTCATGAAGGACTTAACTATCTCGTGGGCGAAACAGACGGACTCAACCCCGCGAGGGATCCACGAGTACCTGGTAAACAGCAATCTGTGATCTCATTTACAAAGAAGAACATACAAGGTCTTAACATAGCTGCAGGAGATGGGTTCCCTACAAAAGTGTTCTTCAATGGGGAAGAATGCCAACTTCTAAAAATATTCCCAGCTAACGACAGCCGGAGGAACTTAGCTTCGTTCATTCCGAGCATTCTAATACTACTATTCGTGTTTGTGTTTATTCAACAATAG 1953 46.49 MADLIILFLIFAAIPFSISQPTIQAPPPPAADSCNDIFISYTFNQGTKLPPNLTDRAQQPFRFESTLSILNNGLSELKSWRVFVGFQHNEFLVSAAGAVLFDGVSVPGKVGNGTVFAGFPVTDLKTAVETAGDLTQMQVQVKLVGTQFGVAPPNSPMPANISLANDGFLCPRPTLRGKSEMNVCCKPDPHVKTNITTSGEFLPRRNGDLTIMYDVTRTYDSSYWAQVTISNHNPLGRLDYWKLSWEWMRDEFIYSMKGAHPSVVDSTDCIFGRQGAYYRELDFSNVLSCERKPTIVDLPPTKANDTTLGLVPFCCRNGTILPSHMDPTKSISAFQMQVFKMPPDLNRSQITPPQNWKISGLLNPSYICGVPVRVSPSEFPDASGLLLNSTAVASWQVVCNITHVKDDTPKCCVSFSAFYNDSVVPCGTCACGCSHNSGRTCNATSPAMLLPPEALLVPFENRTTLAVAWAGLKHYPIPNPMPCADNCGVSINWHLYTDYRDGWSARITLFNWDEVNFADWFAAVEMKKAAPGFQAMYSFNATTLELDGSNNTIFMQGHEGLNYLVGETDGLNPARDPRVPGKQQSVISFTKKNIQGLNIAAGDGFPTKVFFNGEECQLLKIFPANDSRRNLASFIPSILILLFVFVFIQQ 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4865995 4869493 + Sed0008922.1 Sed12g0793 731749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0793 650 PANTHER COBRA-LIKE PROTEIN 7 18 647 - -
Sed12g0793 650 Pfam COBRA-like protein 223 402 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0793 Sed-Chr12:4865995 Sed12g2020 Sed-Chr12:31062518 3.90E-33 dispersed
Sed07g1929 Sed-Chr7:33709873 Sed12g0793 Sed-Chr12:4865995 4.20E-219 transposed
Sed12g0793 Sed-Chr12:4865995 Sed02g1150 Sed-Chr2:48663748 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0793 - - - 0.0