Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0794 ATGTCTACGCCAAGTTCGAGCTCTGTAAGGAAGCCTAATGAAGCTGTTGCCGACCAGTTTCCGGCCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCGACATGTCTCATGATCTTGGAGAAGAAGCTTCGTATGTGTCGTTATGAAGTAACGAAATGTAGCCGAGCCGAGGATGCGCTTTCGCTTCTCAGAAGGTATAGAAACGGATTCGATATTGTTTTGAGCGACGTGCACATGCCAGACATGGATGGATTCAAGCTTCTGGAATACATTGGACTGGAAATGGACTTGCCTGTAATAATGATGTCGGTGGACGATGGAAAGAGCGTTGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTGATTAAACCTGTTGGAATCGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAGCGGAAGTATGAATGGAAGGACTTGGAGCAATCTGGTGTGGAGGATGGGCAGCAAAAAACAAACGAAGAAGCAGAATATTCATCTTCTGCTAATGAAGGAAGTTGGAGGAACTCAAAGAGGAGGAAGGATGATGTAGATGATGCCGAGGAGAAGGACGATTCATCGACCCTCAAGAAACCGAGAGTTGTTTGGTCCGTTGAGCTTCACCAACAGTTTGTGGCGGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAACGTTGCCAGCCACCTTCAGAAATATCGCTTGTACTTGAGAAGACTTAGTGGAATGACACAACACCAGAGTAATTTGAACAACTCATTCATGAGTGCCCAAGATGCATTCGGCCCCTCTCTAAACGGGCTCGATCTTCAAACTTTGGCTGCTGCCAGTCAACTCCAGCCTCAAAGCCTTGCTACGCTCCAAGCAGCTGGATTTGGTAGGCCTACAGCAAAACCAGGCATGCCTATGCCTCTTGTTGATCAAAGGAATCACATTTTTAGCTTTGAAAACCCGAAGTTGAGATTCGGTGATGGACAACAGCCACATTTGAACGGTAGTAAACCAATAAATCTACTTCATGGAATTCCAACGACGATGGAGCCAAAACAACTGGTTAATCTGCAGCAGCATTCTGCACAATCTCATGGAAACATGACAATGCAAGTTAGCCCCAAAGGGAGCCAAACTAGCTCTTTACTATTGCAGTCACCTCAACCACAAGCTAGACAGATCCTAAACGAAAGTACTGCAACTAGCGTTACAAAGCTTCCACCAACAATACAGCAGTCAGTTTTACCGAATGGAACTACCGGTGCGGTTTTGGCTAGGAATGAATTTGCAACTAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCATGAACCAAACTGCAGAGTTGCCTGGTAACAGTTTTCCTCTTCAGAGTACACCAGGAATGTCGACTATTGTTCCGAAGGGAAGGTTTCCAGACGAGGTTAACTTGAACATCAGAGGATCTGACAGTTTTGTGCCAAGCTTTGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAACATGTAGGCATGACTTTCGATGCTTCGCAAGGCAGTCTCGACATTCCACCCTCAGCCTTTGCTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAACAGGAACACATCTCCGGCAGGGAAGGGCATGTACTTGTCAGAAGAAGGAAGCGGCAATGGGAGTCTCGATAGGAATGCATGTCAACAATTCAACCCCCTTTTCGTTGACGGTTCAGTGAAAGTTAAAGTGGAAAGAGCTTCTGAAAGTAGCAATCAAACTGACCTTTTCTCTGAACACTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAGGGAAGCATTGCAACAGCTGAAAGTGAGTTGGAATGGATGTTTCATCATAATACTCCTGTTTAG 1977 45.47 MSTPSSSSVRKPNEAVADQFPAGLRVLVVDDDPTCLMILEKKLRMCRYEVTKCSRAEDALSLLRRYRNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKSVVMKGVTHGACDYLIKPVGIEALKNIWQHVVRKRKYEWKDLEQSGVEDGQQKTNEEAEYSSSANEGSWRNSKRRKDDVDDAEEKDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGMTQHQSNLNNSFMSAQDAFGPSLNGLDLQTLAAASQLQPQSLATLQAAGFGRPTAKPGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPINLLHGIPTTMEPKQLVNLQQHSAQSHGNMTMQVSPKGSQTSSLLLQSPQPQARQILNESTATSVTKLPPTIQQSVLPNGTTGAVLARNEFATNSRGGGYNLVSPASTMLNFPMNQTAELPGNSFPLQSTPGMSTIVPKGRFPDEVNLNIRGSDSFVPSFDMFRDLHPQKPDWDLQHVGMTFDASQGSLDIPPSAFAHQGYASSQQNGQNRNTSPAGKGMYLSEEGSGNGSLDRNACQQFNPLFVDGSVKVKVERASESSNQTDLFSEHFGQEDLMSALLKQQQGSIATAESELEWMFHHNTPV 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4870388 4874816 - Sed0010768.1 Sed12g0794 731750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0794 658 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Sed12g0794 658 MobiDBLite consensus disorder prediction 152 198 - -
Sed12g0794 658 FunFam Two-component response regulator 197 260 - -
Sed12g0794 658 Pfam Myb-like DNA-binding domain 203 253 IPR001005 -
Sed12g0794 658 CDD REC_typeB_ARR-like 26 140 - -
Sed12g0794 658 Gene3D - 198 260 - -
Sed12g0794 658 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 304 IPR045279 GO:0009736(InterPro)
Sed12g0794 658 SUPERFAMILY Homeodomain-like 198 258 IPR009057 -
Sed12g0794 658 MobiDBLite consensus disorder prediction 547 588 - -
Sed12g0794 658 Gene3D - 24 161 - -
Sed12g0794 658 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Sed12g0794 658 MobiDBLite consensus disorder prediction 177 198 - -
Sed12g0794 658 SUPERFAMILY CheY-like 23 148 IPR011006 -
Sed12g0794 658 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 257 IPR017930 -
Sed12g0794 658 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Sed12g0794 658 MobiDBLite consensus disorder prediction 552 571 - -
Sed12g0794 658 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677(InterPro)
Sed12g0794 658 FunFam Two-component response regulator 24 161 - -
Sed12g0794 658 PIRSF RR_ARR_type-B 6 649 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1152 Sed-Chr2:48668430 Sed12g0794 Sed-Chr12:4870388 1.80E-279 dispersed
Sed03g2640 Sed-Chr3:42303883 Sed12g0794 Sed-Chr12:4870388 8.70E-41 dispersed
Sed04g0021 Sed-Chr4:115763 Sed12g0794 Sed-Chr12:4870388 7.00E-44 dispersed
Sed04g0022 Sed-Chr4:115763 Sed12g0794 Sed-Chr12:4870388 5.20E-42 dispersed
Sed07g1071 Sed-Chr7:7728830 Sed12g0794 Sed-Chr12:4870388 8.40E-46 dispersed
Sed09g0087 Sed-Chr9:689380 Sed12g0794 Sed-Chr12:4870388 2.90E-35 dispersed
Sed12g0794 Sed-Chr12:4870388 Sed12g0796 Sed-Chr12:4870388 0.00E+00 dispersed
Sed12g0794 Sed-Chr12:4870388 Sed12g0795 Sed-Chr12:4870388 0.00E+00 tandem
Sed12g0794 Sed-Chr12:4870388 Sed02g1151 Sed-Chr2:48668430 0.00E+00 wgd
Sed12g0794 Sed-Chr12:4870388 Sed04g1768 Sed-Chr4:32307521 4.70E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40142 PF00072 Response_reg 1.50E-21 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0794 K14491 - csv:101209013 1087.4