Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0796 ATGCCAGACATGGATGGATTCAAGCTTCTGGAATACATTGGACTGGAAATGGACTTGCCTGTAATAATGATGTCGGTGGACGATGGAAAGAGCGTTGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTGATTAAACCTGTTGGAATCGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAGCGGAAGTATGAATGGAAGGACTTGGAGCAATCTGGTGTGGAGGATGGGCAGCAAAAAACAAACGAAGAAGCAGAATATTCATCTTCTGCTAATGAAGGAAGTTGGAGGAACTCAAAGAGGAGGAAGGATGATGTAGATGATGCCGAGGAGAAGGACGATTCATCGACCCTCAAGAAACCGAGAGTTGTTTGGTCCGTTGAGCTTCACCAACAGTTTGTGGCGGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAACGTTGCCAGCCACCTTCAGAAATATCGCTTGTACTTGAGAAGACTTAGTGGAATGACACAACACCAGAGTAATTTGAACAACTCATTCATGAGTGCCCAAGATGCATTCGGCCCCTCTCTAAACGGGCTCGATCTTCAAACTTTGGCTGCTGCCAGTCAACTCCAGCCTCAAAGCCTTGCTACGCTCCAAGCAGCTGGATTTGGTAGGCCTACAGCAAAACCAGGCATGCCTATGCCTCTTGTTGATCAAAGGAATCACATTTTTAGCTTTGAAAACCCGAAGTTGAGATTCGGTGATGGACAACAGCCACATTTGAACGGTAGTAAACCAATAAATCTACTTCATGGAATTCCAACGACGATGGAGCCAAAACAACTGGTTAATCTGCAGCAGCATTCTGCACAATCTCATGGAAACATGACAATGCAAGTTAGCCCCAAAGGGAGCCAAACTAGCTCTTTACTATTGCAGTCACCTCAACCACAAGCTAGACAGATCCTAAACGAAAGTACTGCAACTAGCGTTACAAAGCTTCCACCAACAATACAGCAGTCAGTTTTACCGAATGGAACTACCGGTGCGGTTTTGGCTAGGAATGAATTTGCAACTAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCATGAACCAAACTGCAGAGTTGCCTGGTAACAGTTTTCCTCTTCAGAGTACACCAGGAATGTCGACTATTGTTCCGAAGGGAAGGTTTCCAGACGAGGTTAACTTGAACATCAGAGGATCTGACAGTTTTGTGCCAAGCTTTGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAACATGTAGGCATGACTTTCGATGCTTCGCAAGGCAGTCTCGACATTCCACCCTCAGCCTTTGCTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAACAGGAACACATCTCCGGCAGGGAAGGGCATGTACTTGTCAGAAGAAGGAAGCGGCAATGGGAGTCTCGATAGGAATGCATGTCAACAATTCAACCCCCTTTTCGTTGACGGTTCAGTGAAAGTTAAAGTGGAAAGAGCTTCTGAAAGTAGCAATCAAACTGACCTTTTCTCTGAACACTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAGGGAAGCATTGCAACAGCTGAAAGTGAGTTGGAATGGATGTTTCATCATAATACTCCTGTTTAG 1743 45.21 MPDMDGFKLLEYIGLEMDLPVIMMSVDDGKSVVMKGVTHGACDYLIKPVGIEALKNIWQHVVRKRKYEWKDLEQSGVEDGQQKTNEEAEYSSSANEGSWRNSKRRKDDVDDAEEKDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGMTQHQSNLNNSFMSAQDAFGPSLNGLDLQTLAAASQLQPQSLATLQAAGFGRPTAKPGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPINLLHGIPTTMEPKQLVNLQQHSAQSHGNMTMQVSPKGSQTSSLLLQSPQPQARQILNESTATSVTKLPPTIQQSVLPNGTTGAVLARNEFATNSRGGGYNLVSPASTMLNFPMNQTAELPGNSFPLQSTPGMSTIVPKGRFPDEVNLNIRGSDSFVPSFDMFRDLHPQKPDWDLQHVGMTFDASQGSLDIPPSAFAHQGYASSQQNGQNRNTSPAGKGMYLSEEGSGNGSLDRNACQQFNPLFVDGSVKVKVERASESSNQTDLFSEHFGQEDLMSALLKQQQGSIATAESELEWMFHHNTPV 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4870388 4874816 - Sed0010768.3 Sed12g0796 731752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0796 580 MobiDBLite consensus disorder prediction 474 493 - -
Sed12g0796 580 MobiDBLite consensus disorder prediction 99 120 - -
Sed12g0796 580 SUPERFAMILY CheY-like 1 70 IPR011006 -
Sed12g0796 580 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 179 IPR017930 -
Sed12g0796 580 Gene3D - 120 182 - -
Sed12g0796 580 SUPERFAMILY Homeodomain-like 120 180 IPR009057 -
Sed12g0796 580 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 276 IPR045279 GO:0009736(InterPro)
Sed12g0796 580 Pfam Myb-like DNA-binding domain 125 175 IPR001005 -
Sed12g0796 580 PIRSF RR_ARR_type-B 1 571 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed12g0796 580 MobiDBLite consensus disorder prediction 74 120 - -
Sed12g0796 580 NCBIfam myb-like DNA-binding domain, SHAQKYF class 123 176 IPR006447 GO:0003677(InterPro)
Sed12g0796 580 ProSiteProfiles Response regulatory domain profile. 1 62 IPR001789 GO:0000160(InterPro)
Sed12g0796 580 FunFam Two-component response regulator 119 182 - -
Sed12g0796 580 Pfam Response regulator receiver domain 1 56 IPR001789 GO:0000160(InterPro)
Sed12g0796 580 MobiDBLite consensus disorder prediction 469 510 - -
Sed12g0796 580 CDD REC_typeB_ARR-like 1 62 - -
Sed12g0796 580 Gene3D - 1 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0794 Sed-Chr12:4870388 Sed12g0796 Sed-Chr12:4870388 0.00E+00 dispersed
Sed12g0796 Sed-Chr12:4870388 Sed12g2304 Sed-Chr12:33214239 1.80E-61 dispersed
Sed12g0795 Sed-Chr12:4870388 Sed12g0796 Sed-Chr12:4870388 0.00E+00 tandem
Sed12g0796 Sed-Chr12:4870388 Sed12g0797 Sed-Chr12:4870388 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40144 PF00072 Response_reg 3.70E-08 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0796 K14491 - csv:101209013 957.592