Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0796 | ATGCCAGACATGGATGGATTCAAGCTTCTGGAATACATTGGACTGGAAATGGACTTGCCTGTAATAATGATGTCGGTGGACGATGGAAAGAGCGTTGTCATGAAGGGAGTGACTCATGGTGCTTGTGACTATTTGATTAAACCTGTTGGAATCGAAGCGCTGAAGAACATATGGCAGCATGTTGTTCGCAAGCGGAAGTATGAATGGAAGGACTTGGAGCAATCTGGTGTGGAGGATGGGCAGCAAAAAACAAACGAAGAAGCAGAATATTCATCTTCTGCTAATGAAGGAAGTTGGAGGAACTCAAAGAGGAGGAAGGATGATGTAGATGATGCCGAGGAGAAGGACGATTCATCGACCCTCAAGAAACCGAGAGTTGTTTGGTCCGTTGAGCTTCACCAACAGTTTGTGGCGGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAACGTTGCCAGCCACCTTCAGAAATATCGCTTGTACTTGAGAAGACTTAGTGGAATGACACAACACCAGAGTAATTTGAACAACTCATTCATGAGTGCCCAAGATGCATTCGGCCCCTCTCTAAACGGGCTCGATCTTCAAACTTTGGCTGCTGCCAGTCAACTCCAGCCTCAAAGCCTTGCTACGCTCCAAGCAGCTGGATTTGGTAGGCCTACAGCAAAACCAGGCATGCCTATGCCTCTTGTTGATCAAAGGAATCACATTTTTAGCTTTGAAAACCCGAAGTTGAGATTCGGTGATGGACAACAGCCACATTTGAACGGTAGTAAACCAATAAATCTACTTCATGGAATTCCAACGACGATGGAGCCAAAACAACTGGTTAATCTGCAGCAGCATTCTGCACAATCTCATGGAAACATGACAATGCAAGTTAGCCCCAAAGGGAGCCAAACTAGCTCTTTACTATTGCAGTCACCTCAACCACAAGCTAGACAGATCCTAAACGAAAGTACTGCAACTAGCGTTACAAAGCTTCCACCAACAATACAGCAGTCAGTTTTACCGAATGGAACTACCGGTGCGGTTTTGGCTAGGAATGAATTTGCAACTAACAGCAGAGGTGGAGGGTACAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTCCCCATGAACCAAACTGCAGAGTTGCCTGGTAACAGTTTTCCTCTTCAGAGTACACCAGGAATGTCGACTATTGTTCCGAAGGGAAGGTTTCCAGACGAGGTTAACTTGAACATCAGAGGATCTGACAGTTTTGTGCCAAGCTTTGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAACATGTAGGCATGACTTTCGATGCTTCGCAAGGCAGTCTCGACATTCCACCCTCAGCCTTTGCTCATCAAGGGTATGCCTCTAGCCAACAAAATGGACAAAACAGGAACACATCTCCGGCAGGGAAGGGCATGTACTTGTCAGAAGAAGGAAGCGGCAATGGGAGTCTCGATAGGAATGCATGTCAACAATTCAACCCCCTTTTCGTTGACGGTTCAGTGAAAGTTAAAGTGGAAAGAGCTTCTGAAAGTAGCAATCAAACTGACCTTTTCTCTGAACACTTTGGTCAGGAGGACCTAATGAGTGCACTTCTTAAGCAGCAACAGGGAAGCATTGCAACAGCTGAAAGTGAGTTGGAATGGATGTTTCATCATAATACTCCTGTTTAG | 1743 | 45.21 | MPDMDGFKLLEYIGLEMDLPVIMMSVDDGKSVVMKGVTHGACDYLIKPVGIEALKNIWQHVVRKRKYEWKDLEQSGVEDGQQKTNEEAEYSSSANEGSWRNSKRRKDDVDDAEEKDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGMTQHQSNLNNSFMSAQDAFGPSLNGLDLQTLAAASQLQPQSLATLQAAGFGRPTAKPGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPINLLHGIPTTMEPKQLVNLQQHSAQSHGNMTMQVSPKGSQTSSLLLQSPQPQARQILNESTATSVTKLPPTIQQSVLPNGTTGAVLARNEFATNSRGGGYNLVSPASTMLNFPMNQTAELPGNSFPLQSTPGMSTIVPKGRFPDEVNLNIRGSDSFVPSFDMFRDLHPQKPDWDLQHVGMTFDASQGSLDIPPSAFAHQGYASSQQNGQNRNTSPAGKGMYLSEEGSGNGSLDRNACQQFNPLFVDGSVKVKVERASESSNQTDLFSEHFGQEDLMSALLKQQQGSIATAESELEWMFHHNTPV | 580 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4870388 | 4874816 | - | Sed0010768.3 | Sed12g0796 | 731752 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0796 | 580 | MobiDBLite | consensus disorder prediction | 474 | 493 | - | - | |
Sed12g0796 | 580 | MobiDBLite | consensus disorder prediction | 99 | 120 | - | - | |
Sed12g0796 | 580 | SUPERFAMILY | CheY-like | 1 | 70 | IPR011006 | - | |
Sed12g0796 | 580 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 122 | 179 | IPR017930 | - | |
Sed12g0796 | 580 | Gene3D | - | 120 | 182 | - | - | |
Sed12g0796 | 580 | SUPERFAMILY | Homeodomain-like | 120 | 180 | IPR009057 | - | |
Sed12g0796 | 580 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 1 | 276 | IPR045279 | GO:0009736(InterPro) | |
Sed12g0796 | 580 | Pfam | Myb-like DNA-binding domain | 125 | 175 | IPR001005 | - | |
Sed12g0796 | 580 | PIRSF | RR_ARR_type-B | 1 | 571 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Sed12g0796 | 580 | MobiDBLite | consensus disorder prediction | 74 | 120 | - | - | |
Sed12g0796 | 580 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 123 | 176 | IPR006447 | GO:0003677(InterPro) | |
Sed12g0796 | 580 | ProSiteProfiles | Response regulatory domain profile. | 1 | 62 | IPR001789 | GO:0000160(InterPro) | |
Sed12g0796 | 580 | FunFam | Two-component response regulator | 119 | 182 | - | - | |
Sed12g0796 | 580 | Pfam | Response regulator receiver domain | 1 | 56 | IPR001789 | GO:0000160(InterPro) | |
Sed12g0796 | 580 | MobiDBLite | consensus disorder prediction | 469 | 510 | - | - | |
Sed12g0796 | 580 | CDD | REC_typeB_ARR-like | 1 | 62 | - | - | |
Sed12g0796 | 580 | Gene3D | - | 1 | 71 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g0794 | Sed-Chr12:4870388 | Sed12g0796 | Sed-Chr12:4870388 | 0.00E+00 | dispersed | |
Sed12g0796 | Sed-Chr12:4870388 | Sed12g2304 | Sed-Chr12:33214239 | 1.80E-61 | dispersed | |
Sed12g0795 | Sed-Chr12:4870388 | Sed12g0796 | Sed-Chr12:4870388 | 0.00E+00 | tandem | |
Sed12g0796 | Sed-Chr12:4870388 | Sed12g0797 | Sed-Chr12:4870388 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40144 | PF00072 | Response_reg | 3.70E-08 | CL0304 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0796 | K14491 | - | csv:101209013 | 957.592 |