Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0800 ATGGCGGGTAACCCGGCTGTGGTCATTTGCAGTGAGGAGTTCGTTAGCCCGGTGGCGGCGTCGCGGCTGTTCAGGGCTTTGGTTATCGACAGCGACCACCTCATTCCGAAGCTGCTTCCTCAGGCAATCACAAGTATTGAGCTCTTGGAAGGCCGTGGTGGCCCTGGTACTATCAAGAACATGACACTTGCTCAAGGCAATGAAGCAAAAACGGTGAAGCATAGAGTGGATGAAATTGATGAAGAAAATTTAAAGTACGCCTACACGGTGATAGAGGGCGGGGCGTTACCGGACAAGATTGAGTCGATTTCGCATGGGATCAAGTTCGAGGCAGCTAGCGATGGAGGGACGAAAGGCACCAATGTGAGCCATTACCAGCCTAAGCCAGGAGCCAACATCACTGAAGAAGAGATTAGGGCTGAGGAAGCCAAGGCCAAGGCCATTTTCAAGCTTGTCGAACTTTATCTCCTAACAAACCCAGAAGCTTATGCTTAA 495 50.91 MAGNPAVVICSEEFVSPVAASRLFRALVIDSDHLIPKLLPQAITSIELLEGRGGPGTIKNMTLAQGNEAKTVKHRVDEIDEENLKYAYTVIEGGALPDKIESISHGIKFEAASDGGTKGTNVSHYQPKPGANITEEEIRAEEAKAKAIFKLVELYLLTNPEAYA 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4905022 4906216 + Sed0027350.1 Sed12g0800 731756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0800 164 Pfam Pathogenesis-related protein Bet v 1 family 13 105 IPR000916 GO:0006952(InterPro)
Sed12g0800 164 CDD Bet_v1-like 11 156 - -
Sed12g0800 164 Gene3D - 6 162 IPR023393 -
Sed12g0800 164 SUPERFAMILY Bet v1-like 10 163 - -
Sed12g0800 164 PANTHER OS03G0300400 PROTEIN-RELATED 10 163 IPR050279 GO:0004864(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009738(PANTHER)|GO:0010427(PANTHER)|GO:0038023(PANTHER)
Sed12g0800 164 FunFam Major pollen allergen Bet v 1-A 6 163 - -
Sed12g0800 164 PRINTS Major pollen allergen Bet V1 signature 7 27 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Sed12g0800 164 PRINTS Major pollen allergen Bet V1 signature 114 130 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Sed12g0800 164 PRINTS Major pollen allergen Bet V1 signature 54 63 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Sed12g0800 164 PRINTS Major pollen allergen Bet V1 signature 148 158 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Sed12g0800 164 PRINTS Major pollen allergen Bet V1 signature 89 102 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Sed12g0800 164 PRINTS Major pollen allergen Bet V1 signature 30 40 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
Sed12g0800 164 PRINTS Major pollen allergen Bet V1 signature 70 89 IPR024949 GO:0004864(InterPro)|GO:0009738(InterPro)|GO:0010427(InterPro)|GO:0038023(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0800 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g118 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00452 Cam06g0482 Cec06g0486 Cco06g0485 Clacu06g0469 Cmu06g0469 Cre06g1243 Cone14ag0741 . Cone7ag0123 Cone4ag0126 . Csa06g01769 . . . . . . . . . . Sed12g0800 . . . . . . . . Bhi12g01893 Tan06g2718 Cmetu06g2208 Lac11g0897 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145