Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0805 ATGGTGAATGATGGAGGGAAGAACAAGAAGACAACCCTCGTCGGCGTTTCTAATTTTTTGTTTCTTGCTGCCATGGTAGTTGTGATGGCAGTTGGCGTCAACGGCAACTTTGGCTTCGGCGGTGCCTCGCTGTTCTCGAGCCCCAAACAAGCAGTTAAGGCCTTGTGTCAACCTGCAGAATATCAAGAAGTTTGCGAGAAAGCCCTTGCCAAGGCCGGTGTCCAAACGAACAACCCACGAGAACTAGCCAAGGCGGGATTACATTACGCCATAGACGAAATCAAATCAGCCATTCAAACAACCAATATATTGAAAGGATCAATTAGAGACCCCAGAGCCAAGAAAGCACTCAACGAATGCGACGACCTTATGGATTACGCAATTGACGATCTCGCACTCTCGTTCGATAGAGTTGTTGACAACTTTGACATCACCAAAGTCAATGATTATATGGAGGATGTTAAGATTTGGTTGAGCGGCGCATTGACGTATCAACAAACTTGCATAGATGGATTTGAAAATGTTACTGACGAAACAGGAAAAACGATGGCGGAGTTGTTAAAGTTTTCGAAAGAAATGATTGCCAATGGGCTTGATATGATGGGTGGGATAACGTCCCTTATAAACGATTTCGGTTTTCGGCTTCCATCTTTCGGGCGACGATTGTTAACAAAAGAACCATATGAAGAAGAACAGCCATCGTGGGTATACAACAGACGAGGGCTACTACAAGCCACTCCAAAAAATATCCAAGCGGACGCTATAGTAGCTAAAGATGGGAGTGGAAAATACAAGACAATTACTCAAGCCTTACAAGCTGCCCCAAAAATGAGTAATAAACCGTTTGTGATTTATATTAAAGCGGGAGTTTATAAAGAGCAAGTGATGGTCGATAAAACAATGACTCATGTCATGATGATCGGAGATGGCCCAACTAAAACTAAAATCACCGGTAGTCAGAACTTTTTTGATGGAACACCTACATTCAAAACTGCTACTGTCACGATCATCGGAAGTAACTTCATAGGAAAAAACATTGGTTTCGAGAACACGGCTGGAGCAGCGAAACACCAGGCCGTGGCGTTGCGAGTTCAATCCGACATGTCGATCTTCTACAACTGCCAAATGGATGGATACCAAGACACTCTATACACCCACGCCCATCGCCAATTCTATCGAGACTGTACCATCACAGGCACCATCGACTTCATCTTCGGCAATGCTGCGGTTGTGTTCCAGAACTGCAAGATCTTCGTAAGAAAACCAATGGAGAATCAAAAATGCATCGTGACCGCGCAGGGACGGCTCCAGAAGAAAGAGCCCACCGGCACCGTCCTGCAAAACTGCGTCATTGCGTCCGCTCCGGACTTCTTCCCAGTCCGGCATACCAACCATGCTTACCTCGGCCGGCCGTGGAAGCAATACTCGAGAACCATCATCATGCAATCACAAATCGACGACCTGATCCAACCCGAAGGCTGGCTTCCATGGGAAGGCAATTTCGCTCTCAACACTCTGTTTTACGCCGAGATTAATAACAGGGGACCTGGCTCAGTTAAGGATAAACGAGTCAAGTGGAGGGGAATTAAGCAGATCACGCCGCAACATGCCGCCGATTTCACCGCTGGGTTGTTTATTCGTGGAAATCCTTGGATTCGGCCTACTGGAGTGCCGTACGATTCCGGTATGATGAAAGTCTAG 1701 46.5 MVNDGGKNKKTTLVGVSNFLFLAAMVVVMAVGVNGNFGFGGASLFSSPKQAVKALCQPAEYQEVCEKALAKAGVQTNNPRELAKAGLHYAIDEIKSAIQTTNILKGSIRDPRAKKALNECDDLMDYAIDDLALSFDRVVDNFDITKVNDYMEDVKIWLSGALTYQQTCIDGFENVTDETGKTMAELLKFSKEMIANGLDMMGGITSLINDFGFRLPSFGRRLLTKEPYEEEQPSWVYNRRGLLQATPKNIQADAIVAKDGSGKYKTITQALQAAPKMSNKPFVIYIKAGVYKEQVMVDKTMTHVMMIGDGPTKTKITGSQNFFDGTPTFKTATVTIIGSNFIGKNIGFENTAGAAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKIFVRKPMENQKCIVTAQGRLQKKEPTGTVLQNCVIASAPDFFPVRHTNHAYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWEGNFALNTLFYAEINNRGPGSVKDKRVKWRGIKQITPQHAADFTAGLFIRGNPWIRPTGVPYDSGMMKV 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4944696 4953640 + Sed0017524.1 Sed12g0805 731761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0805 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 202 IPR035513 -
Sed12g0805 566 Pfam Pectinesterase 253 549 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed12g0805 566 NCBIfam pectinesterase inhibitor domain 46 196 IPR006501 GO:0004857(InterPro)
Sed12g0805 566 CDD PMEI-like_3 54 206 - -
Sed12g0805 566 ProSitePatterns Pectinesterase signature 1. 278 297 IPR018040 -
Sed12g0805 566 FunFam Pectinesterase 48 205 - -
Sed12g0805 566 Pfam Plant invertase/pectin methylesterase inhibitor 51 200 IPR006501 GO:0004857(InterPro)
Sed12g0805 566 Gene3D - 247 563 IPR012334 -
Sed12g0805 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 204 IPR035513 -
Sed12g0805 566 PANTHER PECTINESTERASE 13 553 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed12g0805 566 SMART PMEI_2 47 200 IPR006501 GO:0004857(InterPro)
Sed12g0805 566 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Sed12g0805 566 FunFam Pectinesterase 247 563 - -
Sed12g0805 566 SUPERFAMILY Pectin lyase-like 251 561 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0255 Sed-Chr9:2036900 Sed12g0805 Sed-Chr12:4944696 1.40E-175 dispersed
Sed11g1512 Sed-Chr11:30779781 Sed12g0805 Sed-Chr12:4944696 7.00E-111 dispersed
Sed12g0805 Sed-Chr12:4944696 Sed14g1360 Sed-Chr14:22453067 8.20E-112 dispersed
Sed12g0805 Sed-Chr12:4944696 Sed12g0806 Sed-Chr12:4957211 1.00E-250 tandem
Sed12g0805 Sed-Chr12:4944696 Sed02g1163 Sed-Chr2:48755114 2.00E-243 wgd
Sed12g0805 Sed-Chr12:4944696 Sed04g1778 Sed-Chr4:32417976 2.00E-182 wgd
Sed12g0805 Sed-Chr12:4944696 Sed09g0254 Sed-Chr9:2032683 1.40E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0805 K01051 - csv:101212686 825.854