Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0833 ATGCTTCAGGAAGCTTCAACAATACCTGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGGTAACATAGATAGACTTAATGAGGTTTCCGACAATTTCGAGATCCAGCCTGAGCCTGGACTTCGACGAATCAGCAGTTTCTCTTGCTTATCTGGGGCTGCCTTGAGTGCAAATGCCACTCTAGCAAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATACTTCCGACTTGGGACTCTCCTAACTCTTTCCGTAAGGTTCCTTCATCACCCACTCTTTCAAGGTTGGATATCTTGTCAACGTCTCTGCAGAGTAATCTGTCAAACTTAAGTTGCAGTCCATCTGACTATGATTCACACTTTTTGAAATCCATGAGTTCTCCTTCCGGAAGTGAAGGATTTCTTAATGTTAAGGAACTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTATGTTCTGAAGAAAATGGATGGCTATATTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACGTTGTATGAAACCATTGTTTTTTATTTCAATCTACTAGATTGGGAAGATAAGAATGAAACCCTGGACGTTTTGGACATGGATAATTCAAATCTTCTTGATGATTGTAGCATTACTCAGGGAAGGTTATCTCCTTTGGGAAACAATAGTATAAGTGTTTCAGATATCGACAATATATTCGAGAACCATTCACACGCCGAAGAAAGAATGCAAAACTATTCCCTAAGGCATGGGGTGCTTGATAGCCTCCAGCGTGCTCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAAGAAATGGAGGATCGTCCTGATTTAGTTTCTGTGGGATCTTGTGTTTTAGTCGTTCTTCTTCATGGAAAGGATTTGTATACGCTAAATTTGGGTGATAGTAGAGCAGTAATAGCTACCCTTGGTGAAGGTACTATGAGAGGGAACGGGGAACTGAAAGCTGTCCAGCTCACTGAGAGTCACACTGTGGACAATAAACTTGAAAGAGCACAGTTACATCATGATCATCCCGATGATCCCACAATCATTGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGATGAAAAAGTTCAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTAAAAAGCCCTCCCTACATTTCCACTCAACCGGCACTGTCTGTTCATAGGATATCAAAATCAGATTGCTTTGTTATAGTTGGGAGTGATGGTCTATTTGATTTTTTTGGCAATGACGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGTGATCCTGCAAAATTTTTACTGGAGCAGCTCTTATTGAAAGCAGCTGATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCTGGCAGGAGAAGGAAATATCATGATGATGTGACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACCAGCATGTAA 1560 41.41 MLQEASTIPEGELEVSFGYKCNGNIDRLNEVSDNFEIQPEPGLRRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSNLSNLSCSPSDYDSHFLKSMSSPSGSEGFLNVKELQVAGGAAGEDRVQAVCSEENGWLYCAIYDGFNGRDAADFLAGTLYETIVFYFNLLDWEDKNETLDVLDMDNSNLLDDCSITQGRLSPLGNNSISVSDIDNIFENHSHAEERMQNYSLRHGVLDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVIATLGEGTMRGNGELKAVQLTESHTVDNKLERAQLHHDHPDDPTIIVGGKVKGKLKVTRAFGVGYLKMKKFNDALMGILRVRNLKSPPYISTQPALSVHRISKSDCFVIVGSDGLFDFFGNDEAVNLVHSYILSNPTGDPAKFLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSM 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5144162 5149640 - Sed0021789.1 Sed12g0833 731789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0833 519 SUPERFAMILY PP2C-like 151 507 IPR036457 -
Sed12g0833 519 PANTHER PROTEIN PHOSPHATASE 2C 146 504 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed12g0833 519 ProSiteProfiles PPM-type phosphatase domain profile. 137 506 IPR001932 -
Sed12g0833 519 SMART PP2C_4 129 504 IPR001932 -
Sed12g0833 519 Pfam Protein phosphatase 2C 246 457 IPR001932 -
Sed12g0833 519 CDD PP2Cc 150 506 IPR001932 -
Sed12g0833 519 Gene3D - 117 515 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1186 Sed-Chr2:48858314 Sed12g0833 Sed-Chr12:5144162 1.70E-180 dispersed
Sed12g0833 Sed-Chr12:5144162 Sed14g0488 Sed-Chr14:4825772 1.10E-65 dispersed
Sed12g0833 Sed-Chr12:5144162 Sed12g0834 Sed-Chr12:5144162 2.80E-300 tandem
Sed12g0833 Sed-Chr12:5144162 Sed02g1185 Sed-Chr2:48858314 2.80E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0833 - - - 0.0