Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0847 ATGAGGCCGTACGGTCACTCTATCGACGGTTCTCACTCCGATCCGCCGCCGGAATGGACCGCTTCCGCTCACCTCTCCAGCCATGGAGAGGCGGATTGGCCGTTGGGATCGAGGGAGCAGGAATCGTACCCGGAACGACCGGAAGAGGCCGATTGTATATACTATCTACGTACCGGATTCTGTGGATACGGCTCTCGTTGTAGGTTTAATCATCCTCGTGAGCGTGGCGCGGTTTTGGGAGGTTCTAGACCTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTGTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGCGTTTCTTGTAAGTATCATCATCCTCAGCAGGAAAAAGGTTCTCTCAGCCCCGTGCTGCTGAATTTCTTTGGCTACCCACTACGGCCGGGTGAAAAGGAGTGCTCGTATTATTTAAAGAATGGGCAGTGCAAGTTTGGTGCTACATGCAAATTTCATCACCCCGAGCCAGCTGGCTTGCAGTTTCCTGCACCATCGCCCATTCAGGTTGCACCAGTGCCAGCTCCAATGGGTCCTGCGCCCTCTGTTTATCCTCCTGTGCAGTCGCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTAGCAAGGTCTCCAATGTTGTCGAGCCCATACGTCCCCAACCCTTATGGCCCTATGTTGGTTTCCCCAGGAGTTGTTCAATTCCCAAGTTGGAATCCTTACCAAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACATTCTGTTGGATCAGGGCAACTTTATGGAATGGCACAATTTTCGCCTTCTGCACCGGCCTATGCAGGATCTTATCAGCCCATGCCATCCATTGGTCTGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAATATTACATCAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACTCCAAGGTCAAGTGTTGTTCTTAGCCAACTAGGTCTTCCTCTGCGCCCGGGTGCACCACCTTGCACTCACTTCATGCAACGAGGAATGTGTAAGTTTGGCCCGGCATGCAAATTTGACCACTCGATGGAACGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCGGTAGCCGGTACTTTAGCCCCATCATCATCATCCTCAGATTTGAGGTCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCATCTCTAGTGGATTGGCTGGTTCAACTACATCAAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGACCGTCGGCGAGCAGCACCTCCAGCACCACCATTGTGGAGGGTCGTACTTGA 1446 50.35 MRPYGHSIDGSHSDPPPEWTASAHLSSHGEADWPLGSREQESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERGAVLGGSRPGGRDYPERVGQPVCQYYMRTGMCKFGVSCKYHHPQQEKGSLSPVLLNFFGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPIQVAPVPAPMGPAPSVYPPVQSPSAHSSQQYGVILARSPMLSSPYVPNPYGPMLVSPGVVQFPSWNPYQAPMSPVASPSAQHSVGSGQLYGMAQFSPSAPAYAGSYQPMPSIGLSSTSQKEHSFPERPGQPECQYYIRTGDCKFGSSCRYHHPPELVTPRSSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSDLRSEHFSGSRKDSNPSRMSSSMSISSGLAGSTTSRTEMHSHSSVQRSSQSSGPSASSTSSTTIVEGRT 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5223649 5228049 + Sed0002919.1 Sed12g0847 731803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0847 481 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 SUPERFAMILY CCCH zinc finger 95 121 IPR036855 GO:0046872(InterPro)
Sed12g0847 481 SUPERFAMILY CCCH zinc finger 353 380 IPR036855 GO:0046872(InterPro)
Sed12g0847 481 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 MobiDBLite consensus disorder prediction 404 481 - -
Sed12g0847 481 Gene3D - 301 389 - -
Sed12g0847 481 Gene3D - 42 122 - -
Sed12g0847 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 330 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 376 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 MobiDBLite consensus disorder prediction 425 481 - -
Sed12g0847 481 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872(InterPro)
Sed12g0847 481 PANTHER PROTEIN PHOSPHATASE RELATED 38 377 IPR050974 GO:0003729(PANTHER)
Sed12g0847 481 MobiDBLite consensus disorder prediction 1 44 - -
Sed12g0847 481 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872(InterPro)
Sed12g0847 481 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 SMART c3hfinal6 349 376 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 SMART c3hfinal6 303 330 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872(InterPro)
Sed12g0847 481 FunFam CCCH type zinc finger protein 301 386 - -
Sed12g0847 481 Gene3D - 123 171 - -
Sed12g0847 481 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1209 Sed-Chr2:48985279 Sed12g0847 Sed-Chr12:5223649 3.70E-116 dispersed
Sed05g3228 Sed-Chr5:41922124 Sed12g0847 Sed-Chr12:5223649 8.90E-08 dispersed
Sed08g2465 Sed-Chr8:37580438 Sed12g0847 Sed-Chr12:5223649 2.80E-12 dispersed
Sed12g0847 Sed-Chr12:5223649 Sed12g0848 Sed-Chr12:5223649 3.90E-147 tandem
Sed08g1215 Sed-Chr8:25123498 Sed12g0847 Sed-Chr12:5223649 4.60E-24 transposed
Sed12g0847 Sed-Chr12:5223649 Sed02g1208 Sed-Chr2:48985279 2.00E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40149 PF00642 zf-CCCH 1.30E-07 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0847 - - - 0.0