Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0848 ATGAGGCCGTACGGTCACTCTATCGACGGTTCTCACTCCGATCCGCCGCCGGAATGGACCGCTTCCGCTCACCTCTCCAGCCATGGAGAGGCGGATTGGCCGTTGGGATCGAGGGAGCAGGAATCGTACCCGGAACGACCGGAAGAGGCCGATTGTATATACTATCTACGTACCGGATTCTGTGGATACGGCTCTCGTTGTAGGTTTAATCATCCTCGTGAGCGTGGCGCGGTTTTGGGAGGTTCTAGACCTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTGTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGCGTTTCTTGTAAGTATCATCATCCTCAGCAGGAAAAAGGTTCTCTCAGCCCCGTGCTGCTGAATTTCTTTGGCTACCCACTACGGCCGGGTGAAAAGGAGTGCTCGTATTATTTAAAGAATGGGCAGTGCAAGTTTGGTGCTACATGCAAATTTCATCACCCCGAGCCAGCTGGCTTGCAGTTTCCTGCACCATCGCCCATTCAGGTTGCACCAGTGCCAGCTCCAATGGGTCCTGCGCCCTCTGTTTATCCTCCTGTGCAGTCGCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTAGCAAGGTCTCCAATGTTGTCGAGCCCATACGTCCCCAACCCTTATGGCCCTATGTTGGTTTCCCCAGGAGTTGTTCAATTCCCAAGTTGGAATCCTTACCAAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACATTCTGTTGGATCAGGGCAACTTTATGGAATGGCACAATTTTCGCCTTCTGCACCGGCCTATGCAGGATCTTATCAGCCCATGCCATCCATTGGTCTGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAATATTACATCAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACTCCAAGGTCAAGTGTTGTTCTTAGCCAACTAGGTCTTCCTCTGCGCCCGGTTAGTCTTTCTACTTTTTAA 1071 50.61 MRPYGHSIDGSHSDPPPEWTASAHLSSHGEADWPLGSREQESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERGAVLGGSRPGGRDYPERVGQPVCQYYMRTGMCKFGVSCKYHHPQQEKGSLSPVLLNFFGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPIQVAPVPAPMGPAPSVYPPVQSPSAHSSQQYGVILARSPMLSSPYVPNPYGPMLVSPGVVQFPSWNPYQAPMSPVASPSAQHSVGSGQLYGMAQFSPSAPAYAGSYQPMPSIGLSSTSQKEHSFPERPGQPECQYYIRTGDCKFGSSCRYHHPPELVTPRSSVVLSQLGLPLRPVSLSTF 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5223649 5228049 + Sed0002919.2 Sed12g0848 731804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0848 356 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Sed12g0848 356 SUPERFAMILY CCCH zinc finger 307 331 IPR036855 GO:0046872(InterPro)
Sed12g0848 356 Gene3D - 42 122 - -
Sed12g0848 356 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 SUPERFAMILY CCCH zinc finger 95 121 IPR036855 GO:0046872(InterPro)
Sed12g0848 356 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872(InterPro)
Sed12g0848 356 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 Gene3D - 292 343 - -
Sed12g0848 356 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 MobiDBLite consensus disorder prediction 1 44 - -
Sed12g0848 356 Gene3D - 123 171 - -
Sed12g0848 356 PANTHER PROTEIN PHOSPHATASE RELATED 38 350 IPR050974 GO:0003729(PANTHER)
Sed12g0848 356 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 SMART c3hfinal6 303 330 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 330 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Sed12g0848 356 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1208 Sed-Chr2:48985279 Sed12g0848 Sed-Chr12:5223649 1.50E-117 dispersed
Sed08g1215 Sed-Chr8:25123498 Sed12g0848 Sed-Chr12:5223649 4.60E-24 dispersed
Sed12g0847 Sed-Chr12:5223649 Sed12g0848 Sed-Chr12:5223649 3.90E-147 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40150 PF00642 zf-CCCH 7.40E-08 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0848 - - - 0.0