Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0854 ATGGGTGGGTGTTTTCCTTGTTTTGGATCCTCTGATGAAGACGGTAATGGCGTTAAATCAGCTTCAAAGAAGGATTCAGCTAAGGATGGCTCCACCGCTCTGTCTCACCAGACCTCAGTTAAATCGAAGTCACAGAATGTATCTGATGGTAAGAAGGAACCAAACATTCAAAAGGATGGGACAACAGCACATATTGCAGCCCAAACATTTACATTTCGGGAACTCGCTACAGCTACAAAGAACTTCAGACCGGAATGCTTACTGGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCGCTTGGAGAGCACAGGACAGGTAGTGGCTGTGAAACAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAATTTCTGGTAGAGGTTCTAATGCTTAGCCTATTACATCACACGAATCTTGTTAACTTGATAGGGTATTGTGCTGACGGGGATCAACGTCTTCTTGTTTATGAATTCATGCCATTGGGGTCCTTGGAAGATCATTTGCACGACCTTCCACCTGATAAGGATCCCTTGGATTGGAATACTAGAATGAAGATCGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGATAAAGCAAACCCCCCTGTTATATATCGAGACTTGAAGTCGTCTAATATTCTTCTTGACGAGGGCTACCACCCCAAGCTTTCAGATTTCGGTCTTGCAAAACTGGGTCCAGTCGGCGATAAGACTCATGTCTCGACGAGAGTGATGGGAACGTATGGTTATTGTGCTCCAGAGTATGCTATGACTGGTCAACTCACTCTCAAGTCGGATGTCTATAGTTTTGGAGTCGTCTTTCTAGAACTTATCACAGGGCGCAAAGCGATCGATAATACTAGAGGTCCCGGGGAGAATAATCTTGTAGCTTGGGCTCGGCCACTTTTTAAAGATCGCCGGAAGTTCCCTAGGATGGCCGATCCGCTGCTGCAAGGGCGCTATCCCATGCGGGGACTTTATCAGGCATTGGCAGTTGCAGCAATGTGCTTGCAGGAGCAGGCTGCTACTAGACCTCTAATCGGGGACGTTGTCACTGCATTGACGTATTTAGCTTCTCAAACTTATGATCCTAATGCAGCTGCTTCTCAAAGCAATCGAATGAGTGGATCGACCCCACGAGCCCGAGACGAACGTAGAGGTTTTCCAGATGGACTGGATAGCCCCGATGAGCGTGGTCGTGGTCGTGGTTCCCCTTCAAACTACAGAAACTCACCCGATTACCGGAAGAAAGATCTCCATAGGGAGTTGAGTTCTGGAGGTACAGAACTGAGCAGAATTGATACTGGAGGCGGGTCCGGTCGAAAGTGGGGATTGGATGAGTTAGAACGACAAGAATCTCTTCGAGACAGTCCTGTATATACTGGGAGAGCAAGGGAAACACCAAGGAACCGCGACCTAAACAGAGAACGTGCAGTCGCAGAAGCAAAAGTGTGGGGTGAAAACTGGAGAGAGAGAAAGCGGGCGAATGCGCAAGGCAGCTTCGACGGTTCACAAGAATGA 1527 47.94 MGGCFPCFGSSDEDGNGVKSASKKDSAKDGSTALSHQTSVKSKSQNVSDGKKEPNIQKDGTTAHIAAQTFTFRELATATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHTNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKDPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGENNLVAWARPLFKDRRKFPRMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAASQSNRMSGSTPRARDERRGFPDGLDSPDERGRGRGSPSNYRNSPDYRKKDLHRELSSGGTELSRIDTGGGSGRKWGLDELERQESLRDSPVYTGRARETPRNRDLNRERAVAEAKVWGENWRERKRANAQGSFDGSQE 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5311168 5318292 + Sed0024667.1 Sed12g0854 731810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0854 508 CDD STKc_IRAK 88 357 - -
Sed12g0854 508 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524(InterPro)
Sed12g0854 508 MobiDBLite consensus disorder prediction 380 405 - -
Sed12g0854 508 Gene3D Phosphorylase Kinase; domain 1 52 158 - -
Sed12g0854 508 MobiDBLite consensus disorder prediction 31 45 - -
Sed12g0854 508 SUPERFAMILY Protein kinase-like (PK-like) 68 367 IPR011009 -
Sed12g0854 508 SMART serkin_6 82 359 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0854 508 ProSiteProfiles Protein kinase domain profile. 82 359 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0854 508 Pfam Protein kinase domain 87 293 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0854 508 PANTHER OS07G0668900 PROTEIN 37 376 - -
Sed12g0854 508 FunFam Serine/threonine-protein kinase PBS1 159 374 - -
Sed12g0854 508 FunFam Serine/threonine-protein kinase PBS1 55 158 - -
Sed12g0854 508 MobiDBLite consensus disorder prediction 413 429 - -
Sed12g0854 508 MobiDBLite consensus disorder prediction 368 477 - -
Sed12g0854 508 Gene3D Transferase(Phosphotransferase) domain 1 159 379 - -
Sed12g0854 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0854 508 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0724 Sed-Chr2:45055854 Sed12g0854 Sed-Chr12:5311168 2.30E-148 dispersed
Sed04g2743 Sed-Chr4:39601062 Sed12g0854 Sed-Chr12:5311168 1.60E-159 dispersed
Sed05g2905 Sed-Chr5:40025222 Sed12g0854 Sed-Chr12:5311168 4.80E-129 dispersed
Sed05g2906 Sed-Chr5:40025222 Sed12g0854 Sed-Chr12:5311168 1.60E-101 dispersed
Sed06g0749 Sed-Chr6:7772512 Sed12g0854 Sed-Chr12:5311168 1.40E-110 dispersed
Sed07g0119 Sed-Chr7:1090298 Sed12g0854 Sed-Chr12:5311168 8.10E-174 dispersed
Sed07g2413 Sed-Chr7:39992296 Sed12g0854 Sed-Chr12:5311168 3.00E-158 dispersed
Sed07g2881 Sed-Chr7:43496072 Sed12g0854 Sed-Chr12:5311168 1.90E-120 dispersed
Sed08g1245 Sed-Chr8:25789032 Sed12g0854 Sed-Chr12:5311168 2.10E-113 dispersed
Sed08g1842 Sed-Chr8:33113909 Sed12g0854 Sed-Chr12:5311168 1.50E-130 dispersed
Sed08g1843 Sed-Chr8:33113909 Sed12g0854 Sed-Chr12:5311168 1.50E-130 dispersed
Sed12g0854 Sed-Chr12:5311168 Sed13g1171 Sed-Chr13:15483185 6.00E-138 dispersed
Sed07g0216 Sed-Chr7:1799457 Sed12g0854 Sed-Chr12:5311168 2.90E-133 transposed
Sed12g0854 Sed-Chr12:5311168 Sed02g1214 Sed-Chr2:49030698 4.60E-271 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79975 PF00069 Pkinase 4.90E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0854 - - - 0.0