Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0863 ATGGGGTGTGTTTTTGGGCGAGAAGTATCGGCGAAACCCGATGAGGAGAAATCGAAGGGGGAAATTAGGGTTTCTGAGAAATTGGGGATTTCTGAGGTTCGAGGTAATGTTGGCAATGGCGGATGTAGGGCGGAGGTTGAAGATGATGGTAGAGGTTCGAGACGGCGGCGGCGATCTTCGAGGCCGAATCCGAGATTGAGTAATCCATCGAAGCATTTGCATGGCGAGCAAGTCGCCGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAGGCGATCAATGGATGGATTCCTCGCCGTGCTGATAGTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACTTATAGTAATGTGTACAAAGCAAGGGATACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCCGAGAGTGTGAAATTTATGGCCCGAGAAATTCTCATACTGCGACGTTTGGATCATCCCAATGTCATGAAACTTGAAGGTTTGGTGACATCCCGAATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACCGAACCGCAGGTTAAATGTTATATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATTGGTAATGATGGGATCCTTAAGATAGCTGATTTTGGACTGGCTTCCATCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTCCTTCTTGGAGCTACCGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGTTGTATTCTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAGGTTGCCGCATGCAACCATATTCAAGCCTCAACATTCATACAAGCGATGCATATCAGAGACATTTAAAGACTTCCCGCAGTCATCTCTACCATTAATCGAGACACTTATTGCAATCGACCCAGCTGATCGCCTAACCGCCACAGCTGCTTTACATAGCGAATTTTTTACCACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCAAAGTATCCTCCAAGCAAGGAAATGGATGCGAAACTGCGGGACGAGGAAGCAAGAAGGTTAAGAGCTGCCGGCAGAAGCAATGCTGATGGGGTGAAGAGAACTCGGGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTCCAAGCCAATCTCGATAGACGGCGTCTAATAACACACGCAAATGCAAAGAGCAAGAGCGAAAAGTTTCCTCCTCCTCATCAAGACGGAGCGCTTGGCTACCCTCTGGAATCTTTGAACAACGGCGATCCAATCTACGATCCTCCTGAGGTTCCATTTAGCACTATGAATTTCTCATATCCAAAATCAAGCTTCCAGACATGGTCTGGTCCTTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCCAAGGACTTGCATAAGGAGAAAAACTCTGCTCGTATCTAA 1686 47.69 MGCVFGREVSAKPDEEKSKGEIRVSEKLGISEVRGNVGNGGCRAEVEDDGRGSRRRRRSSRPNPRLSNPSKHLHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVMKLEGLVTSRMSCSLYLVFEYMVHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSRLPHATIFKPQHSYKRCISETFKDFPQSSLPLIETLIAIDPADRLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKRTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLESLNNGDPIYDPPEVPFSTMNFSYPKSSFQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSKDLHKEKNSARI 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5354875 5358633 + Sed0015025.1 Sed12g0863 731819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0863 561 SUPERFAMILY Protein kinase-like (PK-like) 98 394 IPR011009 -
Sed12g0863 561 Gene3D Transferase(Phosphotransferase) domain 1 188 428 - -
Sed12g0863 561 PANTHER CELL DIVISION PROTEIN KINASE 104 389 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed12g0863 561 MobiDBLite consensus disorder prediction 9 28 - -
Sed12g0863 561 MobiDBLite consensus disorder prediction 423 442 - -
Sed12g0863 561 MobiDBLite consensus disorder prediction 545 561 - -
Sed12g0863 561 FunFam probable serine/threonine-protein kinase At1g54610 188 429 - -
Sed12g0863 561 ProSiteProfiles Protein kinase domain profile. 105 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0863 561 MobiDBLite consensus disorder prediction 518 561 - -
Sed12g0863 561 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524(InterPro)
Sed12g0863 561 CDD STKc_CDK9_like 105 389 - -
Sed12g0863 561 FunFam probable serine/threonine-protein kinase At1g54610 92 187 - -
Sed12g0863 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0863 561 SMART serkin_6 105 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0863 561 Gene3D Phosphorylase Kinase; domain 1 92 187 - -
Sed12g0863 561 MobiDBLite consensus disorder prediction 1 75 - -
Sed12g0863 561 MobiDBLite consensus disorder prediction 469 504 - -
Sed12g0863 561 Pfam Protein kinase domain 105 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1547 Sed-Chr1:11185214 Sed12g0863 Sed-Chr12:5354875 5.40E-196 dispersed
Sed02g1223 Sed-Chr2:49098814 Sed12g0863 Sed-Chr12:5354875 1.70E-251 dispersed
Sed05g3159 Sed-Chr5:41561967 Sed12g0863 Sed-Chr12:5354875 2.70E-151 dispersed
Sed08g1643 Sed-Chr8:31598316 Sed12g0863 Sed-Chr12:5354875 1.90E-214 dispersed
Sed08g1644 Sed-Chr8:31598316 Sed12g0863 Sed-Chr12:5354875 1.90E-214 dispersed
Sed08g2416 Sed-Chr8:37239123 Sed12g0863 Sed-Chr12:5354875 6.00E-179 dispersed
Sed10g1594 Sed-Chr10:32478506 Sed12g0863 Sed-Chr12:5354875 2.30E-158 dispersed
Sed11g2030 Sed-Chr11:34366316 Sed12g0863 Sed-Chr12:5354875 3.90E-148 dispersed
Sed11g2031 Sed-Chr11:34366316 Sed12g0863 Sed-Chr12:5354875 3.70E-148 dispersed
Sed12g0863 Sed-Chr12:5354875 Sed12g0865 Sed-Chr12:5355710 4.40E-267 dispersed
Sed12g0863 Sed-Chr12:5354875 Sed12g0864 Sed-Chr12:5354875 4.40E-267 tandem
Sed12g0863 Sed-Chr12:5354875 Sed02g1222 Sed-Chr2:49097689 6.60E-295 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79976 PF00069 Pkinase 6.00E-67 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0863 K08819 - csv:101217952 984.171