Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0863 | ATGGGGTGTGTTTTTGGGCGAGAAGTATCGGCGAAACCCGATGAGGAGAAATCGAAGGGGGAAATTAGGGTTTCTGAGAAATTGGGGATTTCTGAGGTTCGAGGTAATGTTGGCAATGGCGGATGTAGGGCGGAGGTTGAAGATGATGGTAGAGGTTCGAGACGGCGGCGGCGATCTTCGAGGCCGAATCCGAGATTGAGTAATCCATCGAAGCATTTGCATGGCGAGCAAGTCGCCGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAGGCGATCAATGGATGGATTCCTCGCCGTGCTGATAGTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACTTATAGTAATGTGTACAAAGCAAGGGATACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCCGAGAGTGTGAAATTTATGGCCCGAGAAATTCTCATACTGCGACGTTTGGATCATCCCAATGTCATGAAACTTGAAGGTTTGGTGACATCCCGAATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACCGAACCGCAGGTTAAATGTTATATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATTGGTAATGATGGGATCCTTAAGATAGCTGATTTTGGACTGGCTTCCATCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTCCTTCTTGGAGCTACCGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGTTGTATTCTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAGGTTGCCGCATGCAACCATATTCAAGCCTCAACATTCATACAAGCGATGCATATCAGAGACATTTAAAGACTTCCCGCAGTCATCTCTACCATTAATCGAGACACTTATTGCAATCGACCCAGCTGATCGCCTAACCGCCACAGCTGCTTTACATAGCGAATTTTTTACCACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCAAAGTATCCTCCAAGCAAGGAAATGGATGCGAAACTGCGGGACGAGGAAGCAAGAAGGTTAAGAGCTGCCGGCAGAAGCAATGCTGATGGGGTGAAGAGAACTCGGGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTCCAAGCCAATCTCGATAGACGGCGTCTAATAACACACGCAAATGCAAAGAGCAAGAGCGAAAAGTTTCCTCCTCCTCATCAAGACGGAGCGCTTGGCTACCCTCTGGAATCTTTGAACAACGGCGATCCAATCTACGATCCTCCTGAGGTTCCATTTAGCACTATGAATTTCTCATATCCAAAATCAAGCTTCCAGACATGGTCTGGTCCTTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCCAAGGACTTGCATAAGGAGAAAAACTCTGCTCGTATCTAA | 1686 | 47.69 | MGCVFGREVSAKPDEEKSKGEIRVSEKLGISEVRGNVGNGGCRAEVEDDGRGSRRRRRSSRPNPRLSNPSKHLHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVMKLEGLVTSRMSCSLYLVFEYMVHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSRLPHATIFKPQHSYKRCISETFKDFPQSSLPLIETLIAIDPADRLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKRTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLESLNNGDPIYDPPEVPFSTMNFSYPKSSFQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSKDLHKEKNSARI | 561 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5354875 | 5358633 | + | Sed0015025.1 | Sed12g0863 | 731819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0863 | 561 | SUPERFAMILY | Protein kinase-like (PK-like) | 98 | 394 | IPR011009 | - | |
Sed12g0863 | 561 | Gene3D | Transferase(Phosphotransferase) domain 1 | 188 | 428 | - | - | |
Sed12g0863 | 561 | PANTHER | CELL DIVISION PROTEIN KINASE | 104 | 389 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Sed12g0863 | 561 | MobiDBLite | consensus disorder prediction | 9 | 28 | - | - | |
Sed12g0863 | 561 | MobiDBLite | consensus disorder prediction | 423 | 442 | - | - | |
Sed12g0863 | 561 | MobiDBLite | consensus disorder prediction | 545 | 561 | - | - | |
Sed12g0863 | 561 | FunFam | probable serine/threonine-protein kinase At1g54610 | 188 | 429 | - | - | |
Sed12g0863 | 561 | ProSiteProfiles | Protein kinase domain profile. | 105 | 389 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0863 | 561 | MobiDBLite | consensus disorder prediction | 518 | 561 | - | - | |
Sed12g0863 | 561 | ProSitePatterns | Protein kinases ATP-binding region signature. | 111 | 134 | IPR017441 | GO:0005524(InterPro) | |
Sed12g0863 | 561 | CDD | STKc_CDK9_like | 105 | 389 | - | - | |
Sed12g0863 | 561 | FunFam | probable serine/threonine-protein kinase At1g54610 | 92 | 187 | - | - | |
Sed12g0863 | 561 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0863 | 561 | SMART | serkin_6 | 105 | 389 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0863 | 561 | Gene3D | Phosphorylase Kinase; domain 1 | 92 | 187 | - | - | |
Sed12g0863 | 561 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Sed12g0863 | 561 | MobiDBLite | consensus disorder prediction | 469 | 504 | - | - | |
Sed12g0863 | 561 | Pfam | Protein kinase domain | 105 | 389 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1547 | Sed-Chr1:11185214 | Sed12g0863 | Sed-Chr12:5354875 | 5.40E-196 | dispersed | |
Sed02g1223 | Sed-Chr2:49098814 | Sed12g0863 | Sed-Chr12:5354875 | 1.70E-251 | dispersed | |
Sed05g3159 | Sed-Chr5:41561967 | Sed12g0863 | Sed-Chr12:5354875 | 2.70E-151 | dispersed | |
Sed08g1643 | Sed-Chr8:31598316 | Sed12g0863 | Sed-Chr12:5354875 | 1.90E-214 | dispersed | |
Sed08g1644 | Sed-Chr8:31598316 | Sed12g0863 | Sed-Chr12:5354875 | 1.90E-214 | dispersed | |
Sed08g2416 | Sed-Chr8:37239123 | Sed12g0863 | Sed-Chr12:5354875 | 6.00E-179 | dispersed | |
Sed10g1594 | Sed-Chr10:32478506 | Sed12g0863 | Sed-Chr12:5354875 | 2.30E-158 | dispersed | |
Sed11g2030 | Sed-Chr11:34366316 | Sed12g0863 | Sed-Chr12:5354875 | 3.90E-148 | dispersed | |
Sed11g2031 | Sed-Chr11:34366316 | Sed12g0863 | Sed-Chr12:5354875 | 3.70E-148 | dispersed | |
Sed12g0863 | Sed-Chr12:5354875 | Sed12g0865 | Sed-Chr12:5355710 | 4.40E-267 | dispersed | |
Sed12g0863 | Sed-Chr12:5354875 | Sed12g0864 | Sed-Chr12:5354875 | 4.40E-267 | tandem | |
Sed12g0863 | Sed-Chr12:5354875 | Sed02g1222 | Sed-Chr2:49097689 | 6.60E-295 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79976 | PF00069 | Pkinase | 6.00E-67 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0863 | K08819 | - | csv:101217952 | 984.171 |