Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0864 ATGGCGAGCAAGTCGCCGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAGGCGATCAATGGATGGATTCCTCGCCGTGCTGATAGTTTCGAGAAGCTTGATAAAAATTCCCAAATTTGTATGCATTGTTGTTGATCAGATTGGGCAAGGGACTTATAGTAATGTGTACAAAGCAAGGGATACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCCGAGAGTGTGAAATTTATGGCCCGAGAAATTCTCATACTGCGACGTTTGGATCATCCCAATGTCATGAAACTTGAAGGTTTGGTGACATCCCGAATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACCGAACCGCAGGTTAAATGTTATATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATTGGTAATGATGGGATCCTTAAGATAGCTGATTTTGGACTGGCTTCCATCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTCCTTCTTGGAGCTACCGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGTTGTATTCTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAGGTTGCCGCATGCAACCATATTCAAGCCTCAACATTCATACAAGCGATGCATATCAGAGACATTTAAAGACTTCCCGCAGTCATCTCTACCATTAATCGAGACACTTATTGCAATCGACCCAGCTGATCGCCTAACCGCCACAGCTGCTTTACATAGCGAATTTTTTACCACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCAAAGTATCCTCCAAGCAAGGAAATGGATGCGAAACTGCGGGACGAGGAAGCAAGAAGGTTAAGAGCTGCCGGCAGAAGCAATGCTGATGGGGTGAAGAGAACTCGGGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTCCAAGCCAATCTCGATAGACGGCGTCTAATAACACACGCAAATGCAAAGAGCAAGAGCGAAAAGTTTCCTCCTCCTCATCAAGACGGAGCGCTTGGCTACCCTCTGGAATCTTTGAACAACGGCGATCCAATCTACGATCCTCCTGAGGTTCCATTTAGCACTATGAATTTCTCATATCCAAAATCAAGCTTCCAGACATGGTCTGGTCCTTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCCAAGGACTTGCATAAGGAGAAAAACTCTGCTCGTATCTAA 1500 46.8 MASKSPLVGRLGSPPSPARRSMDGFLAVLIVSRSLIKIPKFVCIVVDQIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVMKLEGLVTSRMSCSLYLVFEYMVHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSRLPHATIFKPQHSYKRCISETFKDFPQSSLPLIETLIAIDPADRLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKRTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLESLNNGDPIYDPPEVPFSTMNFSYPKSSFQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSKDLHKEKNSARI 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5354875 5358633 + Sed0015025.2 Sed12g0864 731820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0864 499 Gene3D Transferase(Phosphotransferase) domain 1 126 366 - -
Sed12g0864 499 Gene3D Phosphorylase Kinase; domain 1 38 125 - -
Sed12g0864 499 MobiDBLite consensus disorder prediction 456 499 - -
Sed12g0864 499 CDD STKc_CDK9_like 45 327 - -
Sed12g0864 499 PANTHER CELL DIVISION PROTEIN KINASE 46 327 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed12g0864 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0864 499 SUPERFAMILY Protein kinase-like (PK-like) 45 332 IPR011009 -
Sed12g0864 499 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524(InterPro)
Sed12g0864 499 Pfam Protein kinase domain 46 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0864 499 MobiDBLite consensus disorder prediction 407 442 - -
Sed12g0864 499 ProSiteProfiles Protein kinase domain profile. 43 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0864 499 FunFam probable serine/threonine-protein kinase At1g54610 126 367 - -
Sed12g0864 499 MobiDBLite consensus disorder prediction 483 499 - -
Sed12g0864 499 SMART serkin_6 43 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0864 499 FunFam probable serine/threonine-protein kinase At1g54610 41 125 - -
Sed12g0864 499 MobiDBLite consensus disorder prediction 361 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1222 Sed-Chr2:49097689 Sed12g0864 Sed-Chr12:5354875 1.80E-252 dispersed
Sed12g0864 Sed-Chr12:5354875 Sed13g0562 Sed-Chr13:3905877 3.90E-158 dispersed
Sed12g0863 Sed-Chr12:5354875 Sed12g0864 Sed-Chr12:5354875 4.40E-267 tandem
Sed12g0864 Sed-Chr12:5354875 Sed12g0865 Sed-Chr12:5355710 6.30E-273 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79977 PF00069 Pkinase 2.30E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0864 K08819 - csv:101217952 847.81