Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0864 | ATGGCGAGCAAGTCGCCGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAGGCGATCAATGGATGGATTCCTCGCCGTGCTGATAGTTTCGAGAAGCTTGATAAAAATTCCCAAATTTGTATGCATTGTTGTTGATCAGATTGGGCAAGGGACTTATAGTAATGTGTACAAAGCAAGGGATACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCCGAGAGTGTGAAATTTATGGCCCGAGAAATTCTCATACTGCGACGTTTGGATCATCCCAATGTCATGAAACTTGAAGGTTTGGTGACATCCCGAATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACCGAACCGCAGGTTAAATGTTATATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATTGGTAATGATGGGATCCTTAAGATAGCTGATTTTGGACTGGCTTCCATCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTCCTTCTTGGAGCTACCGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGTTGTATTCTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAGGTTGCCGCATGCAACCATATTCAAGCCTCAACATTCATACAAGCGATGCATATCAGAGACATTTAAAGACTTCCCGCAGTCATCTCTACCATTAATCGAGACACTTATTGCAATCGACCCAGCTGATCGCCTAACCGCCACAGCTGCTTTACATAGCGAATTTTTTACCACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCAAAGTATCCTCCAAGCAAGGAAATGGATGCGAAACTGCGGGACGAGGAAGCAAGAAGGTTAAGAGCTGCCGGCAGAAGCAATGCTGATGGGGTGAAGAGAACTCGGGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTCCAAGCCAATCTCGATAGACGGCGTCTAATAACACACGCAAATGCAAAGAGCAAGAGCGAAAAGTTTCCTCCTCCTCATCAAGACGGAGCGCTTGGCTACCCTCTGGAATCTTTGAACAACGGCGATCCAATCTACGATCCTCCTGAGGTTCCATTTAGCACTATGAATTTCTCATATCCAAAATCAAGCTTCCAGACATGGTCTGGTCCTTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCCAAGGACTTGCATAAGGAGAAAAACTCTGCTCGTATCTAA | 1500 | 46.8 | MASKSPLVGRLGSPPSPARRSMDGFLAVLIVSRSLIKIPKFVCIVVDQIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVMKLEGLVTSRMSCSLYLVFEYMVHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSRLPHATIFKPQHSYKRCISETFKDFPQSSLPLIETLIAIDPADRLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKRTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLESLNNGDPIYDPPEVPFSTMNFSYPKSSFQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSKDLHKEKNSARI | 499 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5354875 | 5358633 | + | Sed0015025.2 | Sed12g0864 | 731820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0864 | 499 | Gene3D | Transferase(Phosphotransferase) domain 1 | 126 | 366 | - | - | |
Sed12g0864 | 499 | Gene3D | Phosphorylase Kinase; domain 1 | 38 | 125 | - | - | |
Sed12g0864 | 499 | MobiDBLite | consensus disorder prediction | 456 | 499 | - | - | |
Sed12g0864 | 499 | CDD | STKc_CDK9_like | 45 | 327 | - | - | |
Sed12g0864 | 499 | PANTHER | CELL DIVISION PROTEIN KINASE | 46 | 327 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Sed12g0864 | 499 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 163 | 175 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0864 | 499 | SUPERFAMILY | Protein kinase-like (PK-like) | 45 | 332 | IPR011009 | - | |
Sed12g0864 | 499 | ProSitePatterns | Protein kinases ATP-binding region signature. | 49 | 72 | IPR017441 | GO:0005524(InterPro) | |
Sed12g0864 | 499 | Pfam | Protein kinase domain | 46 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0864 | 499 | MobiDBLite | consensus disorder prediction | 407 | 442 | - | - | |
Sed12g0864 | 499 | ProSiteProfiles | Protein kinase domain profile. | 43 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0864 | 499 | FunFam | probable serine/threonine-protein kinase At1g54610 | 126 | 367 | - | - | |
Sed12g0864 | 499 | MobiDBLite | consensus disorder prediction | 483 | 499 | - | - | |
Sed12g0864 | 499 | SMART | serkin_6 | 43 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0864 | 499 | FunFam | probable serine/threonine-protein kinase At1g54610 | 41 | 125 | - | - | |
Sed12g0864 | 499 | MobiDBLite | consensus disorder prediction | 361 | 380 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1222 | Sed-Chr2:49097689 | Sed12g0864 | Sed-Chr12:5354875 | 1.80E-252 | dispersed | |
Sed12g0864 | Sed-Chr12:5354875 | Sed13g0562 | Sed-Chr13:3905877 | 3.90E-158 | dispersed | |
Sed12g0863 | Sed-Chr12:5354875 | Sed12g0864 | Sed-Chr12:5354875 | 4.40E-267 | tandem | |
Sed12g0864 | Sed-Chr12:5354875 | Sed12g0865 | Sed-Chr12:5355710 | 6.30E-273 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79977 | PF00069 | Pkinase | 2.30E-66 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0864 | K08819 | - | csv:101217952 | 847.81 |