Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0865 | ATGGCTAGAAATTCTAAATCTGTTGTTGTTTCTAAATCTGTTAATCTCTCTGTTTCAAATCATCATGATTCAATTATGCTTTTGTTCATCTTTCTTTTTATGAATGAAACCAGAATTCCCAAATTTGTATGCATTGTTGTTGATCAGATTGGGCAAGGGACTTATAGTAATGTGTACAAAGCAAGGGATACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCCGAGAGTGTGAAATTTATGGCCCGAGAAATTCTCATACTGCGACGTTTGGATCATCCCAATGTCATGAAACTTGAAGGTTTGGTGACATCCCGAATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACCGAACCGCAGGTTAAATGTTATATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATTGGTAATGATGGGATCCTTAAGATAGCTGATTTTGGACTGGCTTCCATCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTCCTTCTTGGAGCTACCGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGTTGTATTCTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAGGTTGCCGCATGCAACCATATTCAAGCCTCAACATTCATACAAGCGATGCATATCAGAGACATTTAAAGACTTCCCGCAGTCATCTCTACCATTAATCGAGACACTTATTGCAATCGACCCAGCTGATCGCCTAACCGCCACAGCTGCTTTACATAGCGAATTTTTTACCACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCAAAGTATCCTCCAAGCAAGGAAATGGATGCGAAACTGCGGGACGAGGAAGCAAGAAGGTTAAGAGCTGCCGGCAGAAGCAATGCTGATGGGGTGAAGAGAACTCGGGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTCCAAGCCAATCTCGATAGACGGCGTCTAATAACACACGCAAATGCAAAGAGCAAGAGCGAAAAGTTTCCTCCTCCTCATCAAGACGGAGCGCTTGGCTACCCTCTGGAATCTTTGAACAACGGCGATCCAATCTACGATCCTCCTGAGGTTCCATTTAGCACTATGAATTTCTCATATCCAAAATCAAGCTTCCAGACATGGTCTGGTCCTTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCCAAGGACTTGCATAAGGAGAAAAACTCTGCTCGTATCTAA | 1503 | 44.51 | MARNSKSVVVSKSVNLSVSNHHDSIMLLFIFLFMNETRIPKFVCIVVDQIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVMKLEGLVTSRMSCSLYLVFEYMVHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSRLPHATIFKPQHSYKRCISETFKDFPQSSLPLIETLIAIDPADRLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKRTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLESLNNGDPIYDPPEVPFSTMNFSYPKSSFQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSKDLHKEKNSARI | 500 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5355710 | 5358633 | + | Sed0015025.3 | Sed12g0865 | 731821 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0865 | 500 | MobiDBLite | consensus disorder prediction | 484 | 500 | - | - | |
Sed12g0865 | 500 | Pfam | Protein kinase domain | 47 | 328 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0865 | 500 | MobiDBLite | consensus disorder prediction | 362 | 381 | - | - | |
Sed12g0865 | 500 | FunFam | probable serine/threonine-protein kinase At1g54610 | 127 | 368 | - | - | |
Sed12g0865 | 500 | MobiDBLite | consensus disorder prediction | 457 | 500 | - | - | |
Sed12g0865 | 500 | SUPERFAMILY | Protein kinase-like (PK-like) | 46 | 333 | IPR011009 | - | |
Sed12g0865 | 500 | CDD | STKc_CDK9_like | 46 | 328 | - | - | |
Sed12g0865 | 500 | ProSiteProfiles | Protein kinase domain profile. | 44 | 328 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0865 | 500 | ProSitePatterns | Protein kinases ATP-binding region signature. | 50 | 73 | IPR017441 | GO:0005524(InterPro) | |
Sed12g0865 | 500 | PANTHER | CELL DIVISION PROTEIN KINASE | 47 | 328 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Sed12g0865 | 500 | SMART | serkin_6 | 44 | 328 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0865 | 500 | FunFam | probable serine/threonine-protein kinase At1g54610 | 41 | 126 | - | - | |
Sed12g0865 | 500 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 164 | 176 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0865 | 500 | Gene3D | Transferase(Phosphotransferase) domain 1 | 127 | 367 | - | - | |
Sed12g0865 | 500 | Gene3D | Phosphorylase Kinase; domain 1 | 35 | 126 | - | - | |
Sed12g0865 | 500 | MobiDBLite | consensus disorder prediction | 408 | 443 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g0863 | Sed-Chr12:5354875 | Sed12g0865 | Sed-Chr12:5355710 | 4.40E-267 | dispersed | |
Sed12g0865 | Sed-Chr12:5355710 | Sed13g0562 | Sed-Chr13:3905877 | 6.70E-158 | dispersed | |
Sed12g0864 | Sed-Chr12:5354875 | Sed12g0865 | Sed-Chr12:5355710 | 6.30E-273 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79978 | PF00069 | Pkinase | 2.30E-66 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0865 | K08819 | - | csv:101217952 | 847.81 |