Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0865 ATGGCTAGAAATTCTAAATCTGTTGTTGTTTCTAAATCTGTTAATCTCTCTGTTTCAAATCATCATGATTCAATTATGCTTTTGTTCATCTTTCTTTTTATGAATGAAACCAGAATTCCCAAATTTGTATGCATTGTTGTTGATCAGATTGGGCAAGGGACTTATAGTAATGTGTACAAAGCAAGGGATACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCCGAGAGTGTGAAATTTATGGCCCGAGAAATTCTCATACTGCGACGTTTGGATCATCCCAATGTCATGAAACTTGAAGGTTTGGTGACATCCCGAATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACCGAACCGCAGGTTAAATGTTATATGAACCAATTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCGAATCTTCTGATTGGTAATGATGGGATCCTTAAGATAGCTGATTTTGGACTGGCTTCCATCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCCGAACTCCTTCTTGGAGCTACCGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGTTGTATTCTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAGGTTGCCGCATGCAACCATATTCAAGCCTCAACATTCATACAAGCGATGCATATCAGAGACATTTAAAGACTTCCCGCAGTCATCTCTACCATTAATCGAGACACTTATTGCAATCGACCCAGCTGATCGCCTAACCGCCACAGCTGCTTTACATAGCGAATTTTTTACCACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCAAAGTATCCTCCAAGCAAGGAAATGGATGCGAAACTGCGGGACGAGGAAGCAAGAAGGTTAAGAGCTGCCGGCAGAAGCAATGCTGATGGGGTGAAGAGAACTCGGGCACGTGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTCCAAGCCAATCTCGATAGACGGCGTCTAATAACACACGCAAATGCAAAGAGCAAGAGCGAAAAGTTTCCTCCTCCTCATCAAGACGGAGCGCTTGGCTACCCTCTGGAATCTTTGAACAACGGCGATCCAATCTACGATCCTCCTGAGGTTCCATTTAGCACTATGAATTTCTCATATCCAAAATCAAGCTTCCAGACATGGTCTGGTCCTTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGTCATTCATCAAAATCATCCAAGGACTTGCATAAGGAGAAAAACTCTGCTCGTATCTAA 1503 44.51 MARNSKSVVVSKSVNLSVSNHHDSIMLLFIFLFMNETRIPKFVCIVVDQIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVMKLEGLVTSRMSCSLYLVFEYMVHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSRLPHATIFKPQHSYKRCISETFKDFPQSSLPLIETLIAIDPADRLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKRTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLESLNNGDPIYDPPEVPFSTMNFSYPKSSFQTWSGPLMDPAAVGAPRRKKHTAGHSSKSSKDLHKEKNSARI 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5355710 5358633 + Sed0015025.3 Sed12g0865 731821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0865 500 MobiDBLite consensus disorder prediction 484 500 - -
Sed12g0865 500 Pfam Protein kinase domain 47 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0865 500 MobiDBLite consensus disorder prediction 362 381 - -
Sed12g0865 500 FunFam probable serine/threonine-protein kinase At1g54610 127 368 - -
Sed12g0865 500 MobiDBLite consensus disorder prediction 457 500 - -
Sed12g0865 500 SUPERFAMILY Protein kinase-like (PK-like) 46 333 IPR011009 -
Sed12g0865 500 CDD STKc_CDK9_like 46 328 - -
Sed12g0865 500 ProSiteProfiles Protein kinase domain profile. 44 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0865 500 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524(InterPro)
Sed12g0865 500 PANTHER CELL DIVISION PROTEIN KINASE 47 328 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed12g0865 500 SMART serkin_6 44 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0865 500 FunFam probable serine/threonine-protein kinase At1g54610 41 126 - -
Sed12g0865 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0865 500 Gene3D Transferase(Phosphotransferase) domain 1 127 367 - -
Sed12g0865 500 Gene3D Phosphorylase Kinase; domain 1 35 126 - -
Sed12g0865 500 MobiDBLite consensus disorder prediction 408 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0863 Sed-Chr12:5354875 Sed12g0865 Sed-Chr12:5355710 4.40E-267 dispersed
Sed12g0865 Sed-Chr12:5355710 Sed13g0562 Sed-Chr13:3905877 6.70E-158 dispersed
Sed12g0864 Sed-Chr12:5354875 Sed12g0865 Sed-Chr12:5355710 6.30E-273 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79978 PF00069 Pkinase 2.30E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0865 K08819 - csv:101217952 847.81