Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0866 ATGTCGTTGAAGAGCATAATCCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGACGGATCCACGGCGGAATCCGGCGACGGTTTGGCGCAGAGCTGCTGGGCCTACATGCCTCAGGAGTTGTTGCGAGAGGTTCTGATCAGAATCGAGCGGACCGAGAATGCTTGGCCTCCACGGAAGAGCGTCGTCGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATCGTTAAAACTCCTGAGGTTTCCGGCAGATTGACGTTTCCTATCTCCGTCAAGCAGCCTGGCCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCATTGGCTGATGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATTATATCACTGCATGCTGATGACATGTCCAAGACAAGTAGCACTTTTGTTGGAAAATTAAGATCTAATTTTTTAGGCACCAAGTTCACAATATTTGATGGACAGCCACCTCATGCTGGAGCCAAGATTTCAAAAAGTCGCTCCTCAAGGTTTGTGGGCCTGAAACAAGTGTCCCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATACGAGTTAAATGTCTTGGGTTCAAGGGGTCCTAGGAGAATGCATTGTGTTATGGATGCTATTCCTGCTTCTTCCATCGAACCAGGAGGGGTATCTCCAATACAGACTGAATTCTCTCCATGCCGTATCGACTTTCTTCCATCGTTTAGATTTTCCCGGTCAAAATTGAATGTGCCGAACCACGCAGACAATCAACCATCAGGTTCTTCAACTGATCAGAAAGATGGACTTCTGGTGCTTCGGAACAAGTCTCCTCGGTGGCACGAACAGCTCCAGTGCTGGTGCTTGAACTTCCACGGGCGGGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCTCCTGAAAATGGACCGGCTGGACCTGAACATGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGATTACAGATATCCAATCTCAGCGTTTCAGGCTTTTGCTATCTGCCTCAGCAGCTTTGACACGAAGATCGCTTGTGAATGA 1173 48.08 MSLKSIIQEMRSRSRRVVQDGSTAESGDGLAQSCWAYMPQELLREVLIRIERTENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKTSSTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRFVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASSIEPGGVSPIQTEFSPCRIDFLPSFRFSRSKLNVPNHADNQPSGSSTDQKDGLLVLRNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5360522 5365187 - Sed0003844.1 Sed12g0866 731822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0866 390 CDD F-box_AtTLP-like 35 79 - -
Sed12g0866 390 Pfam Tub family 96 385 IPR000007 -
Sed12g0866 390 SUPERFAMILY Tubby C-terminal domain-like 84 390 IPR025659 -
Sed12g0866 390 FunFam Tubby-like F-box protein 92 390 - -
Sed12g0866 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Sed12g0866 390 Gene3D - 29 82 - -
Sed12g0866 390 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Sed12g0866 390 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Sed12g0866 390 PRINTS Tubby superfamily signature 302 319 IPR000007 -
Sed12g0866 390 PRINTS Tubby superfamily signature 320 336 IPR000007 -
Sed12g0866 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Sed12g0866 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Sed12g0866 390 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Sed12g0866 390 PANTHER TUBBY-RELATED 25 389 - -
Sed12g0866 390 Gene3D Tubby Protein; Chain A 92 390 IPR025659 -
Sed12g0866 390 ProSitePatterns Tub family signature 1. 320 333 IPR018066 -
Sed12g0866 390 SUPERFAMILY F-box domain 30 78 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0866 Sed-Chr12:5360522 Sed13g0889 Sed-Chr13:6591280 2.50E-120 dispersed
Sed12g0866 Sed-Chr12:5360522 Sed02g1224 Sed-Chr2:49103413 5.90E-210 wgd
Sed12g0866 Sed-Chr12:5360522 Sed04g1822 Sed-Chr4:32962645 1.70E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40152 PF01167 Tub 2.50E-110 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0866 K19600 - csv:101217713 741.11