Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0951 | ATGGATTCGAAAAGAAACGATGTGGGGGGTATTTCGAAGTCAGCGAGTGAGGATAAAAATCTGAACTCAAAGGTTGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGATAAGATTGATTTGAAAAACCTGGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCAAGGAGTGTTGGTGTTGAAAGCCAAAAGCCTAAGGAGGAGTGGGAAATTGATTTGTCTAAACTTGATATCCGAAAGGTTGTTGCTCACGGGACTTACGGGACGGTATTCAGGGGTACATATGACAATCAAGATGTCGCAGTGAAGCTATTGGACTGGGGGGAGGATGGCCTTGCCACAACTGCTGAAACTGCTGCTTTGCGGGCATCATTCCAGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAACGTTACAAGATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAACGGAAGGCCAAACCTCCCTTCCATCTAGAGCCTGCTGTGTTGTTGTTGAGTTTCTTCCTGGTGGGACATTAAAACATTACTTGATAAATAACAGGAGAAAGAAACTTCCTTTTAAGATTGTGATTCGATTAGCTTTGGATCTCTCTAGAGGGCTTAGTTATCTACATTCTAAGAAGATTGTACATCGTGACGTCAAAACCGAAAATATGTTGCTAGATAATTGCAGAACTCTCAAAATTGCTGATTTTGGGGTTGCCCGTGTCGAAGCTCAGAATCCAAGAGATATGACCGGGGAAACTGGTACTCTTGGATACATGGCCCCCGAGGTTCTTGATGGTAAGCCGTACAATAGACGATGTGATGTCTACAGCTTTGGCATCTGCTTATGGGAAATTTACTGCTGCGCCATGCCTTACCCCGATCTTAGTTTCGCTGACGTGTCATCTGCTGTTGTTCGAAATAATCTGCGACCCGATATCCCGAAATGCTGTCCAAGTTCTCTGGCTAACGTGATGAAGAAATGCTGGGATGGCAACCCATCCAAACGCCCTGAGATGAATGTGGTTGTCAAAATGTTGGAAGCCATTGATACAAGTAAGGGAGGTGGGATGCTTTCAGAAGACGAAGCCCCTAGCTGCTTCTGTTTCGGCCCACCCCGTGGTCCGTGA | 1158 | 45.34 | MDSKRNDVGGISKSASEDKNLNSKVAGMGSISSKDMIFRADKIDLKNLDMQLEKHLSRVWSRSVGVESQKPKEEWEIDLSKLDIRKVVAHGTYGTVFRGTYDNQDVAVKLLDWGEDGLATTAETAALRASFQQEVAVWHKLDHPNVTRFVGASMGATNLKIPSTEGQTSLPSRACCVVVEFLPGGTLKHYLINNRRKKLPFKIVIRLALDLSRGLSYLHSKKIVHRDVKTENMLLDNCRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCAMPYPDLSFADVSSAVVRNNLRPDIPKCCPSSLANVMKKCWDGNPSKRPEMNVVVKMLEAIDTSKGGGMLSEDEAPSCFCFGPPRGP | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5923623 | 5928417 | - | Sed0007895.2 | Sed12g0951 | 731907 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0951 | 385 | Gene3D | Phosphorylase Kinase; domain 1 | 71 | 163 | - | - | |
Sed12g0951 | 385 | Gene3D | Transferase(Phosphotransferase) domain 1 | 182 | 372 | - | - | |
Sed12g0951 | 385 | Pfam | Protein tyrosine and serine/threonine kinase | 83 | 356 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0951 | 385 | SMART | serkin_6 | 82 | 359 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0951 | 385 | PRINTS | Tyrosine kinase catalytic domain signature | 179 | 192 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0951 | 385 | PRINTS | Tyrosine kinase catalytic domain signature | 217 | 235 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0951 | 385 | PRINTS | Tyrosine kinase catalytic domain signature | 283 | 305 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0951 | 385 | PRINTS | Tyrosine kinase catalytic domain signature | 327 | 349 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0951 | 385 | CDD | STKc_MAP3K-like | 88 | 356 | - | - | |
Sed12g0951 | 385 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 223 | 235 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0951 | 385 | ProSiteProfiles | Protein kinase domain profile. | 82 | 359 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0951 | 385 | FunFam | Kinase suppressor of Ras 1 | 71 | 165 | - | - | |
Sed12g0951 | 385 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 48 | 357 | IPR051681 | GO:0004674(PANTHER)|GO:0005886(PANTHER) | |
Sed12g0951 | 385 | FunFam | Serine/threonine-protein kinase HT1 | 182 | 367 | - | - | |
Sed12g0951 | 385 | SUPERFAMILY | Protein kinase-like (PK-like) | 62 | 356 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed09g1106 | Sed-Chr9:35055861 | Sed12g0951 | Sed-Chr12:5923623 | 1.70E-164 | dispersed | |
Sed12g0951 | Sed-Chr12:5923623 | Sed12g1881 | Sed-Chr12:30004010 | 7.20E-144 | dispersed | |
Sed12g0950 | Sed-Chr12:5923623 | Sed12g0951 | Sed-Chr12:5923623 | 1.40E-227 | tandem | |
Sed12g0951 | Sed-Chr12:5923623 | Sed12g0952 | Sed-Chr12:5923623 | 1.40E-227 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79983 | PF07714 | PK_Tyr_Ser-Thr | 6.80E-59 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0951 | - | - | - | 0.0 |