Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0952 ATGGATTCGAAAAGAAACGATGTGGGGGGTATTTCGAAGTCAGCGAGTGAGGATAAAAATCTGAACTCAAAGGTTGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGATAAGATTGATTTGAAAAACCTGGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCAAGGAGTGTTGGTGTTGAAAGCCAAAAGCCTAAGGAGGAGTGGGAAATTGATTTGTCTAAACTTGATATCCGAAAGGTTGTTGCTCACGGGACTTACGGGACGGTATTCAGGGGTACATATGACAATCAAGATGTCGCAGTGAAGCTATTGGACTGGGGGGAGGATGGCCTTGCCACAACTGCTGAAACTGCTGCTTTGCGGGCATCATTCCAGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAACGTTACAAGATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAACGGAAGGCCAAACCTCCCTTCCATCTAGAGCCTGCTGTGTTGTTGTTGAGTTTCTTCCTGGTGGGACATTAAAACATTACTTGATAAATAACAGGAGAAAGAAACTTCCTTTTAAGATTGTGATTCGATTAGCTTTGGATCTCTCTAGAGGGCTTAGTTATCTACATTCTAAGAAGATTGTACATCGTGACGTCAAAACCGAAAATATGTTGCTAGATAATTGCAGAACTCTCAAAATTGCTGATTTTGGGGTTGCCCGTGTCGAAGCTCAGAATCCAAGAGATATGACCGGGGAAACTGGTACTCTTGGATACATGGCCCCCGAGGTTCTTGATGGTAAGCCGTACAATAGACGATGTGATGTCTACAGCTTTGGCATCTGCTTATGGGAAATTTACTGCTGCGCCATGCCTTACCCCGATCTTAGTTTCGCTGACGTGTCATCTGCTGTTGTTCGAAATAATCTGCGACCCGATATCCCGAAATGCTGTCCAAGTTCTCTGGCTAACGTGATGAAGAAATGCTGGGATGGCAACCCATCCAAACGCCCTGAGATGAATGTGGTTGTCAAAATGTTGGAAGCCATTGATACAAGTAAGGGAGGTGGGATGCTTTCAGAAGACGAAGCCCCTAGCTGCTTCTGTTTCGGCCCACCCCGTGGTCCGTGA 1158 45.34 MDSKRNDVGGISKSASEDKNLNSKVAGMGSISSKDMIFRADKIDLKNLDMQLEKHLSRVWSRSVGVESQKPKEEWEIDLSKLDIRKVVAHGTYGTVFRGTYDNQDVAVKLLDWGEDGLATTAETAALRASFQQEVAVWHKLDHPNVTRFVGASMGATNLKIPSTEGQTSLPSRACCVVVEFLPGGTLKHYLINNRRKKLPFKIVIRLALDLSRGLSYLHSKKIVHRDVKTENMLLDNCRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCAMPYPDLSFADVSSAVVRNNLRPDIPKCCPSSLANVMKKCWDGNPSKRPEMNVVVKMLEAIDTSKGGGMLSEDEAPSCFCFGPPRGP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5923623 5926979 - Sed0007895.3 Sed12g0952 731908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0952 385 Gene3D Phosphorylase Kinase; domain 1 71 163 - -
Sed12g0952 385 Gene3D Transferase(Phosphotransferase) domain 1 182 372 - -
Sed12g0952 385 Pfam Protein tyrosine and serine/threonine kinase 83 356 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0952 385 SMART serkin_6 82 359 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0952 385 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0952 385 PRINTS Tyrosine kinase catalytic domain signature 217 235 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0952 385 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0952 385 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0952 385 CDD STKc_MAP3K-like 88 356 - -
Sed12g0952 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0952 385 ProSiteProfiles Protein kinase domain profile. 82 359 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0952 385 FunFam Kinase suppressor of Ras 1 71 165 - -
Sed12g0952 385 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 357 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Sed12g0952 385 FunFam Serine/threonine-protein kinase HT1 182 367 - -
Sed12g0952 385 SUPERFAMILY Protein kinase-like (PK-like) 62 356 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0950 Sed-Chr12:5923623 Sed12g0952 Sed-Chr12:5923623 1.40E-227 dispersed
Sed12g0952 Sed-Chr12:5923623 Sed12g1881 Sed-Chr12:30004010 7.20E-144 dispersed
Sed12g0951 Sed-Chr12:5923623 Sed12g0952 Sed-Chr12:5923623 1.40E-227 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79984 PF07714 PK_Tyr_Ser-Thr 6.80E-59 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0952 - - - 0.0