Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0955 ATGGACACTCCGGAGAGGAACAAGATCGGCTCTACTCCCCTTTCTAAATTTGAGGATTCCCCTGTTTTCAACTACATCAATAATCTTTCACCAATCCAACCTGTCAAGTCCATACATACTACTCAAACATTCAACTCTCTTAGTTTTGCCTCCCTTCCGTCGGTTTTTACTTCGCCACATGCCAGTTCTTACAAGGAGTCTAGATTCTTAAGAAGGCACGGTTTTGCAGATCTATCAAAACCGGAATTCTCTTCCGAAAATGGGAATAAAGTTGACACTGATGGAGTTGTTACAGGGAGTGAGGCACAATTACAGGATAACTCTAGTGCATCAGATGGCAAGTTCGATTCAGTTTCTAATCCATCTACTGAGCGGCCTTCTGAGCATCCAGACACCAACGAGGAGCCACTGGCAATGAAGCGCGATTCTTCTCATCCAGATTGTGAACCAAAGCTACTAGATAGTGCTTCAAAATCAGGTGAAGACCCAGCTTCAAGTGACCCCTGTGTTCAAAATAAATCAGGAAATGGATCATTCGACACTGAAAGGAATAAGCAGGTCGTAAGCCACACTGAAGAAAGAGAGGGGACAGGTTATGACTGGGAAAGTTTAATTACTGAAGGCTCTGATCTATTGATATTCAGCTCACCCAATGGCTCAGAGGCAATCAGGCTCATTCAGAAACCATTAGACCTTGTGACGGGGTTTGCATCAAGCACCTTGTCTCAGATCATGGACAATGACAATACCAATCTGTCTAAAATGAGAATTGATGAACCGATCGAATCTGGTGGTGGACAGCAGGAAATAGAGTTTTTGTCATCTCAAGCTGGGGATGCTTGTGAACTAAAGGATATGGACCAGGCAACAGATAGCCTTTCATTTCCAAATTCGAGTAACACTATGAGTAGGGAAATAACAGATGATGAGGTGGCTAGATACATAACAGATGACTGTAAGCCGGTATCCAATTTGTATCGGGGCATGCGGAGACGGTGTCTGGACTTTGAGGCAGCAGTCAGTCGAAGAAAAAGCTTAGAAGATGGTTCAAGCAGTGGTTCTACTTCTGTGTTGACACATCCAGAAGAGAAGATGGCATCCATGGATACACAGCTGGTCCCTTATAAATCTGGTGGTGGTGGTACAACTAGATGCGTTTTAACTGGAATAGGTTTACACTTAAATGCTTTGGCAACAACTTCAAAGGATGTGAAAAATCTCAATCATGAAAAGTTTTCATCCGAGAGGCAACTGGTTTTGCCCAATTCTAGTGTTTCTGGTCATTCTCCTTCAACTGGTCTCGATCCTATCTTGAATTCGGTTGTTGCTGAAAGAGATATGGATCCTTCAGAGAATCAAAATGAGGAAGCATCTGCATATGTGCTTGCTGAGGATTTCAATCAAAATAGTCCCAAAAAGAAGAGGCGTAGGTTGGAACATCCTGGAGAAGCTGAGTCGTCATGCAAACGCTGTAACTGTAAAAAGTCCAAGTGTTTAAAACTTTACTGTGAATGCTTTGCAGCCGGCGTTTACTGTATTGAGCCATGTTCATGTCAAGATTGCTTTAACAAACCTATTCATGAAGACACTGTTCTTGCAACTCGCAAGCAGATTGAATCTCGCAATCCACTTGCATTTGCTCCGAAAGTGATCAGGAACTCGGATTCTCTTCCGGAAGCTAGGGATGAATCTAACAAAACCCCTGCATCTGCACGACATAAAAGAGGATGCAACTGCAAGAAGTCAAGTTGCCTTAAGAAATACTGTGAATGCTACCAGGTTTTCCCCCTTGGAAAATCATGTGTATATTAG 1812 42.94 MDTPERNKIGSTPLSKFEDSPVFNYINNLSPIQPVKSIHTTQTFNSLSFASLPSVFTSPHASSYKESRFLRRHGFADLSKPEFSSENGNKVDTDGVVTGSEAQLQDNSSASDGKFDSVSNPSTERPSEHPDTNEEPLAMKRDSSHPDCEPKLLDSASKSGEDPASSDPCVQNKSGNGSFDTERNKQVVSHTEEREGTGYDWESLITEGSDLLIFSSPNGSEAIRLIQKPLDLVTGFASSTLSQIMDNDNTNLSKMRIDEPIESGGGQQEIEFLSSQAGDACELKDMDQATDSLSFPNSSNTMSREITDDEVARYITDDCKPVSNLYRGMRRRCLDFEAAVSRRKSLEDGSSSGSTSVLTHPEEKMASMDTQLVPYKSGGGGTTRCVLTGIGLHLNALATTSKDVKNLNHEKFSSERQLVLPNSSVSGHSPSTGLDPILNSVVAERDMDPSENQNEEASAYVLAEDFNQNSPKKKRRRLEHPGEAESSCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNSDSLPEARDESNKTPASARHKRGCNCKKSSCLKKYCECYQVFPLGKSCVY 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5950731 5956577 + Sed0021302.3 Sed12g0955 731911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0955 603 MobiDBLite consensus disorder prediction 101 126 - -
Sed12g0955 603 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 489 524 IPR005172 -
Sed12g0955 603 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 593 IPR005172 -
Sed12g0955 603 MobiDBLite consensus disorder prediction 127 156 - -
Sed12g0955 603 MobiDBLite consensus disorder prediction 159 184 - -
Sed12g0955 603 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 593 IPR044522 GO:0003700(InterPro)
Sed12g0955 603 ProSiteProfiles CRC domain profile. 487 603 IPR005172 -
Sed12g0955 603 SMART CXC_2 486 527 IPR033467 -
Sed12g0955 603 SMART CXC_2 572 603 IPR033467 -
Sed12g0955 603 MobiDBLite consensus disorder prediction 101 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0955 Sed-Chr12:5950731 Sed12g0957 Sed-Chr12:5951657 3.00E-261 dispersed
Sed12g0954 Sed-Chr12:5950731 Sed12g0955 Sed-Chr12:5950731 0.00E+00 tandem
Sed12g0955 Sed-Chr12:5950731 Sed12g0956 Sed-Chr12:5950731 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40162 PF03638 TCR 1.00E-11 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0955 - - - 0.0