Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0956 ATGGACACTCCGGAGAGGAACAAGATCGGCTCTACTCCCCTTTCTAAATTTGAGGATTCCCCTGTTTTCAACTACATCAATAATCTTTCACCAATCCAACCTGTCAAGTCCATACATACTACTCAAACATTCAACTCTCTTAGTTTTGCCTCCCTTCCGTCGGTTTTTACTTCGCCACATGCCAGTTCTTACAAGGAGTCTAGATTCTTAAGAAGGCACGGTTTTGCAGATCTATCAAAACCGGAATTCTCTTCCGAAAATGGGAATAAAGTTGACACTGATGGAGTTGTTACAGGGAGTGAGGCACAATTACAGGATAACTCTAGTGCATCAGATGGCAAGTTCGATTCAGTTTCTAATCCATCTACTGAGCGGCCTTCTGAGCATCCAGACACCAACGAGGAGCCACTGGCAATGAAGCGCGATTCTTCTCATCCAGATTGTGAACCAAAGCTACTAGATAGTGCTTCAAAATCAGGTGAAGACCCAGCTTCAAGTGACCCCTGTGTTCAAAATAAATCAGGAAATGGATCATTCGACACTGAAAGGAATAAGCAGGTCGTAAGCCACACTGAAGAAAGAGAGGGGACAGGTTATGACTGGGAAAGTTTAATTACTGAAGGCTCTGATCTATTGATATTCAGCTCACCCAATGGCTCAGAGGCAATCAGGCTCATTCAGAAACCATTAGACCTTGTGACGGGGTTTGCATCAAGCACCTTGTCTCAGATCATGGACAATGACAATACCAATCTGTCTAAAATGAGAATTGATGAACCGATCGAATCTGGTGGTGGACAGCAGGAAATAGAGTTTTTGTCATCTCAAGCTGGGGATGCTTGTGAACTAAAGGATATGGACCAGGCAACAGATAGCCTTTCATTTCCAAATTCGAGTAACACTATGAGTAGGGAAATAACAGATGATGAGGTGGCTAGATACATAACAGATGACTGTAAGCCGGTATCCAATTTGTATCGGGGCATGCGGAGACGGTGTCTGGACTTTGAGGCAGCAGTCAGTCGAAGAAAAAGCTTAGAAGATGGTTCAAGCAGTGGTTCTACTTCTGTGTTGACACATCCAGAAGAGAAGATGGCATCCATGGATACACAGCTGGTCCCTTATAAATCTGGTGGTGGTGGTACAACTAGATGCGTTTTAACTGGAATAGGTTTACACTTAAATGCTTTGGCAACAACTTCAAAGGATGTGAAAAATCTCAATCATGAAAAGTTTTCATCCGAGAGGCAACTGGTTTTGCCCAATTCTAGTGTTTCTGGTCATTCTCCTTCAACTGGTCTCGATCCTATCTTGAATTCGGTTGTTGCTGAAAGAGATATGGATCCTTCAGAGAATCAAAATGAGGAAGCATCTGCATATGTGCTTGCTGAGGATTTCAATCAAAATAGTCCCAAAAAGAAGAGGCGTAGGTTGGAACATCCTGGAGAAGCTGAGTCGTCATGCAAACGCTGTAACTGTAAAAAGTCCAAGTGTTTAAAACTTTACTGTGAATGCTTTGCAGCCGGCGTTTACTGTATTGAGCCATGTTCATGTCAAGATTGCTTTAACAAACCTATTCATGAAGACACTGTTCTTGCAACTCGCAAGCAGATTGAATCTCGCAATCCACTTGCATTTGCTCCGAAAGTGATCAGGAACTCGGATTCTCTTCCGGAAGCTAGGGATGAATCTAACAAAACCCCTGCATCTGCACGACATAAAAGAGGATGCAACTGCAAGAAGTCAAGTTGCCTTAAGAAATACTGTGAATGCTACCAGGGTGGCGTTGGATGCTCCATCAGTTGCAGATGTGAGGGATGTAAAAATGCATTTGGAAGAAAGGATGGTGAGTTTTACAAGCTAGCCACTTGA 1872 43.16 MDTPERNKIGSTPLSKFEDSPVFNYINNLSPIQPVKSIHTTQTFNSLSFASLPSVFTSPHASSYKESRFLRRHGFADLSKPEFSSENGNKVDTDGVVTGSEAQLQDNSSASDGKFDSVSNPSTERPSEHPDTNEEPLAMKRDSSHPDCEPKLLDSASKSGEDPASSDPCVQNKSGNGSFDTERNKQVVSHTEEREGTGYDWESLITEGSDLLIFSSPNGSEAIRLIQKPLDLVTGFASSTLSQIMDNDNTNLSKMRIDEPIESGGGQQEIEFLSSQAGDACELKDMDQATDSLSFPNSSNTMSREITDDEVARYITDDCKPVSNLYRGMRRRCLDFEAAVSRRKSLEDGSSSGSTSVLTHPEEKMASMDTQLVPYKSGGGGTTRCVLTGIGLHLNALATTSKDVKNLNHEKFSSERQLVLPNSSVSGHSPSTGLDPILNSVVAERDMDPSENQNEEASAYVLAEDFNQNSPKKKRRRLEHPGEAESSCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNSDSLPEARDESNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGEFYKLAT 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5950731 5956577 + Sed0021302.5 Sed12g0956 731912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0956 623 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 610 IPR005172 -
Sed12g0956 623 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 489 524 IPR005172 -
Sed12g0956 623 MobiDBLite consensus disorder prediction 101 126 - -
Sed12g0956 623 SMART CXC_2 572 613 IPR033467 -
Sed12g0956 623 SMART CXC_2 486 527 IPR033467 -
Sed12g0956 623 MobiDBLite consensus disorder prediction 127 156 - -
Sed12g0956 623 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 615 IPR044522 GO:0003700(InterPro)
Sed12g0956 623 MobiDBLite consensus disorder prediction 159 184 - -
Sed12g0956 623 ProSiteProfiles CRC domain profile. 487 612 IPR005172 -
Sed12g0956 623 MobiDBLite consensus disorder prediction 101 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0955 Sed-Chr12:5950731 Sed12g0956 Sed-Chr12:5950731 0.00E+00 tandem
Sed12g0956 Sed-Chr12:5950731 Sed12g0957 Sed-Chr12:5951657 1.20E-276 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40163 PF03638 TCR 1.50E-11 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0956 - - - 0.0