Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0956 ATGGACACTCCGGAGAGGAACAAGATCGGCTCTACTCCCCTTTCTAAATTTGAGGATTCCCCTGTTTTCAACTACATCAATAATCTTTCACCAATCCAACCTGTCAAGTCCATACATACTACTCAAACATTCAACTCTCTTAGTTTTGCCTCCCTTCCGTCGGTTTTTACTTCGCCACATGCCAGTTCTTACAAGGAGTCTAGATTCTTAAGAAGGCACGGTTTTGCAGATCTATCAAAACCGGAATTCTCTTCCGAAAATGGGAATAAAGTTGACACTGATGGAGTTGTTACAGGGAGTGAGGCACAATTACAGGATAACTCTAGTGCATCAGATGGCAAGTTCGATTCAGTTTCTAATCCATCTACTGAGCGGCCTTCTGAGCATCCAGACACCAACGAGGAGCCACTGGCAATGAAGCGCGATTCTTCTCATCCAGATTGTGAACCAAAGCTACTAGATAGTGCTTCAAAATCAGGTGAAGACCCAGCTTCAAGTGACCCCTGTGTTCAAAATAAATCAGGAAATGGATCATTCGACACTGAAAGGAATAAGCAGGTCGTAAGCCACACTGAAGAAAGAGAGGGGACAGGTTATGACTGGGAAAGTTTAATTACTGAAGGCTCTGATCTATTGATATTCAGCTCACCCAATGGCTCAGAGGCAATCAGGCTCATTCAGAAACCATTAGACCTTGTGACGGGGTTTGCATCAAGCACCTTGTCTCAGATCATGGACAATGACAATACCAATCTGTCTAAAATGAGAATTGATGAACCGATCGAATCTGGTGGTGGACAGCAGGAAATAGAGTTTTTGTCATCTCAAGCTGGGGATGCTTGTGAACTAAAGGATATGGACCAGGCAACAGATAGCCTTTCATTTCCAAATTCGAGTAACACTATGAGTAGGGAAATAACAGATGATGAGGTGGCTAGATACATAACAGATGACTGTAAGCCGGTATCCAATTTGTATCGGGGCATGCGGAGACGGTGTCTGGACTTTGAGGCAGCAGTCAGTCGAAGAAAAAGCTTAGAAGATGGTTCAAGCAGTGGTTCTACTTCTGTGTTGACACATCCAGAAGAGAAGATGGCATCCATGGATACACAGCTGGTCCCTTATAAATCTGGTGGTGGTGGTACAACTAGATGCGTTTTAACTGGAATAGGTTTACACTTAAATGCTTTGGCAACAACTTCAAAGGATGTGAAAAATCTCAATCATGAAAAGTTTTCATCCGAGAGGCAACTGGTTTTGCCCAATTCTAGTGTTTCTGGTCATTCTCCTTCAACTGGTCTCGATCCTATCTTGAATTCGGTTGTTGCTGAAAGAGATATGGATCCTTCAGAGAATCAAAATGAGGAAGCATCTGCATATGTGCTTGCTGAGGATTTCAATCAAAATAGTCCCAAAAAGAAGAGGCGTAGGTTGGAACATCCTGGAGAAGCTGAGTCGTCATGCAAACGCTGTAACTGTAAAAAGTCCAAGTGTTTAAAACTTTACTGTGAATGCTTTGCAGCCGGCGTTTACTGTATTGAGCCATGTTCATGTCAAGATTGCTTTAACAAACCTATTCATGAAGACACTGTTCTTGCAACTCGCAAGCAGATTGAATCTCGCAATCCACTTGCATTTGCTCCGAAAGTGATCAGGAACTCGGATTCTCTTCCGGAAGCTAGGGATGAATCTAACAAAACCCCTGCATCTGCACGACATAAAAGAGGATGCAACTGCAAGAAGTCAAGTTGCCTTAAGAAATACTGTGAATGCTACCAGGGTGGCGTTGGATGCTCCATCAGTTGCAGATGTGAGGGATGTAAAAATGCATTTGGAAGAAAGGATGGTGAGTTTTACAAGCTAGCCACTTGA 1872 43.16 MDTPERNKIGSTPLSKFEDSPVFNYINNLSPIQPVKSIHTTQTFNSLSFASLPSVFTSPHASSYKESRFLRRHGFADLSKPEFSSENGNKVDTDGVVTGSEAQLQDNSSASDGKFDSVSNPSTERPSEHPDTNEEPLAMKRDSSHPDCEPKLLDSASKSGEDPASSDPCVQNKSGNGSFDTERNKQVVSHTEEREGTGYDWESLITEGSDLLIFSSPNGSEAIRLIQKPLDLVTGFASSTLSQIMDNDNTNLSKMRIDEPIESGGGQQEIEFLSSQAGDACELKDMDQATDSLSFPNSSNTMSREITDDEVARYITDDCKPVSNLYRGMRRRCLDFEAAVSRRKSLEDGSSSGSTSVLTHPEEKMASMDTQLVPYKSGGGGTTRCVLTGIGLHLNALATTSKDVKNLNHEKFSSERQLVLPNSSVSGHSPSTGLDPILNSVVAERDMDPSENQNEEASAYVLAEDFNQNSPKKKRRRLEHPGEAESSCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNSDSLPEARDESNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGEFYKLAT 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5950731 5956577 + Sed0021302.5 Sed12g0956 731912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0956 623 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 610 IPR005172 -
Sed12g0956 623 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 489 524 IPR005172 -
Sed12g0956 623 MobiDBLite consensus disorder prediction 101 126 - -
Sed12g0956 623 SMART CXC_2 572 613 IPR033467 -
Sed12g0956 623 SMART CXC_2 486 527 IPR033467 -
Sed12g0956 623 MobiDBLite consensus disorder prediction 127 156 - -
Sed12g0956 623 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 615 IPR044522 GO:0003700(InterPro)
Sed12g0956 623 MobiDBLite consensus disorder prediction 159 184 - -
Sed12g0956 623 ProSiteProfiles CRC domain profile. 487 612 IPR005172 -
Sed12g0956 623 MobiDBLite consensus disorder prediction 101 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0956 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0955 Sed-Chr12:5950731 Sed12g0956 Sed-Chr12:5950731 0.00E+00 tandem
Sed12g0956 Sed-Chr12:5950731 Sed12g0957 Sed-Chr12:5951657 1.20E-276 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0956 . 306 620 CPP Transcription Factor Family AT3G22760 53.6 3.5e-87 320.1
Sed12g0955 . 306 593 CPP Transcription Factor Family AT3G22760 51.0 1.6e-71 268.1
Sed11g0045 . 31 515 CPP Transcription Factor Family AT2G20110 56.5 1.6e-141 500.7
Sed08g0784 . 29 504 CPP Transcription Factor Family AT2G20110 53.6 7.9e-128 455.3
Sed11g0046 . 31 395 CPP Transcription Factor Family AT2G20110 58.0 7.2e-113 405.6
Sed11g0046 . 105 379 CPP Transcription Factor Family AT5G25790 50.9 5.0e-75 279.6
Sed11g0045 . 29 522 CPP Transcription Factor Family AT4G29000 57.2 2.1e-153 540.4
Sed08g0784 . 23 527 CPP Transcription Factor Family AT4G29000 53.8 6.9e-141 498.8
Sed11g0046 . 29 417 CPP Transcription Factor Family AT4G29000 55.8 8.8e-120 428.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003693 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 7 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40163 PF03638 TCR 1.50E-11 No_clan Sed TF