Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0961 ATGATAAGCAAATGTTATAGTTTTTGTTACACTACACACCATGCTCCATTGACATCCTTCTCCAAAATGAAATCCCTAAACTCTCTTCTCCCAAAATCTCTCCTCTTCATCTCCATTCTCATCTTCCTCCCCAAATCCTCCCTTCAAGCATCTCCGTTGCCGCCATCACCGCCATCGTCATCGCCACCGCCGCCATTTCTTCCAAACCCAAGACTCCTCAATGCCTACACAGCCCTCCAAGCATGGAAACACGCCATCACCGACGACCCAACTAACTTCACCGCCGACTGGTGCGGCCCCAACGTCTGCAGCTACTCCGGCGTCTTTTGCGCCCCCGCCCCCGACGACCCCCACATCCTCACTGTCGCCGGCATCGACCTCAACCACGCCAACCTCTCCGGCACCCTGCCCGACGACCTCGGTCTCCTGACCGACCTTGCCCTCTTCCACATCAACTCCAACCAATTCTCCGGCACAATTCCGACCTCATTCCGGTGCCTCACTCTGCTCTTCGAGCTCGATCTCAGCAACAATGGCTTCTCCGGCGAGTTCCCCTCTGTCATTCTCGCCCTCCCATCTCTCAAATTCTTCGATATTCGATTCAATCAATTCCATGGCCACATCCCTTCTCCCCTGTTCGACATGAAACTCGATGCTCTGTTTTTGAACAACAACGATTTTGAATTCTCCTTCCCGGAAAACATCGGCGATTCCCCTGTTTCTGTTCTCGTTTTCGCTAATAACAAGATCAATGGATGTTTACCCAAGAGTTTGGCGAAGATGAATCAAACGCTTAATGAAATTGTGATTACGAATAGTGGGCTGAATGGGTGTTTGCCGGAGGAAATTGGGTTGTTGAGTAATCTTACTGTGTTTGATGTTAGTGATAATAATCTGGTGGGACCATTGCCGGAGACGATGGCTGGAATGAAGAGTTTGGAGCAGCTCAATGTTGCGAATAATCGATTGTCCGGCGAGATTCCGGCGGGTATCTGTTCGTTGCCGAATTTGAAGAACTTTACCTACTCGTTTAATTTCTTCTGTGGTGAGCCGTCTGTCTGCCGGAAACTTCAGGCTAGTGATGACCGGAAAAATTGCTTGCCGGATAGGCCTTTGCAACGCTCGCCGGAGGAATGTGCGGCTTTCTATTCGTACCCTGTTGACTGCGGCCTCTTTGGTTGTACTCGTCGGCCGCCGCCTCCGCCGCCGCCTCCTCCTCCTCCGCCTCCGCCCCCTCCTCCCCCACCTCCACCTCCGCCCCCTCCTCCCCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCGCCGCCGCCGCCGCCGCCGCCGCCACCTTACTACTAA 1356 53.76 MISKCYSFCYTTHHAPLTSFSKMKSLNSLLPKSLLFISILIFLPKSSLQASPLPPSPPSSSPPPPFLPNPRLLNAYTALQAWKHAITDDPTNFTADWCGPNVCSYSGVFCAPAPDDPHILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNQFSGTIPTSFRCLTLLFELDLSNNGFSGEFPSVILALPSLKFFDIRFNQFHGHIPSPLFDMKLDALFLNNNDFEFSFPENIGDSPVSVLVFANNKINGCLPKSLAKMNQTLNEIVITNSGLNGCLPEEIGLLSNLTVFDVSDNNLVGPLPETMAGMKSLEQLNVANNRLSGEIPAGICSLPNLKNFTYSFNFFCGEPSVCRKLQASDDRKNCLPDRPLQRSPEECAAFYSYPVDCGLFGCTRRPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYY 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5979910 5981708 - Sed0007532.1 Sed12g0961 731917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0961 451 MobiDBLite consensus disorder prediction 396 451 - -
Sed12g0961 451 SUPERFAMILY L domain-like 74 357 - -
Sed12g0961 451 PRINTS Proline rich extensin signature 406 422 - -
Sed12g0961 451 PRINTS Proline rich extensin signature 438 451 - -
Sed12g0961 451 PRINTS Proline rich extensin signature 426 438 - -
Sed12g0961 451 PRINTS Proline rich extensin signature 392 404 - -
Sed12g0961 451 Pfam Leucine Rich Repeat 170 188 IPR001611 GO:0005515(InterPro)
Sed12g0961 451 Pfam Leucine Rich Repeat 288 309 IPR001611 GO:0005515(InterPro)
Sed12g0961 451 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Sed12g0961 451 Gene3D Ribonuclease Inhibitor 75 236 IPR032675 -
Sed12g0961 451 FunFam Leucine-rich repeat extensin-like protein 1 76 237 - -
Sed12g0961 451 Gene3D Ribonuclease Inhibitor 237 362 IPR032675 -
Sed12g0961 451 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Sed12g0961 451 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 62 445 IPR051582 -
Sed12g0961 451 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 255 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1943 Sed-Chr5:32794399 Sed12g0961 Sed-Chr12:5979910 2.20E-50 dispersed
Sed08g0832 Sed-Chr8:6703014 Sed12g0961 Sed-Chr12:5979910 7.10E-28 dispersed
Sed10g1400 Sed-Chr10:30049672 Sed12g0961 Sed-Chr12:5979910 2.60E-33 dispersed
Sed11g0032 Sed-Chr11:293658 Sed12g0961 Sed-Chr12:5979910 4.00E-15 dispersed
Sed12g0961 Sed-Chr12:5979910 Sed12g1856 Sed-Chr12:29807283 1.90E-47 dispersed
Sed12g0961 Sed-Chr12:5979910 Sed02g1338 Sed-Chr2:49718184 4.30E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0961 - - - 0.0