Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0962 ATGGGTAATGCAGATTTTGAATGCCCTCACAGAGTTGCCATCCCACCAACAAAGCCATTCTTGGAGTCCTTAGGCTCCAATCTCAAAGAAACCTTCTTCCCAGATGACCCTTTCAAACAGTTCAAAAACCACCCTTTAGCTGCCCAAATTCTCCTCTGGCTCAAATACTTCATCCCCATTCTCGAATGGGGTCCCCGCTACAACCTCGACTTCTTCAAAGCCGACCTCGTCTCCGGTATCACCATCGCTAGCCTTGCCGTCCCTCAGGGTATCAGCTACGCCAGCCTCGCCAGCATCCCTCCCATCATCGGCCTATATTCAAGCTTTATTCCTCCGTTGATATACGCCATGCTCGGTAGCTCGAGAGATGTGGCAGTGGGGACGGTAGCAGTAGCGTCGTTGCTCATGGCAGCCATGATGGGGAAGGAAGTCAGCCCCGTGGAGCATCCGAAGCAATACGTTCAGTTGGTTTTCACTGCCACGTTCTTCGCGGGAGTATTTCAAGCATCCCTCGGCTTTCTCAGATTGGGGCTTATCGTGGACTTTTTGTCGCATGCAACCATAGTGGGGTTCATGGGTGGTGCGGCAACGGTGGTTTGTCTTCAACAGCTAAAAGGAATTATGGGATTGGTTCATTTTACTCATGAAACTGACATTGTTTCTGTTATGACTTCTGTTTTCTCTCAAATTCATCAGTGGAGATGGGAAAGTATTGTGTTGGGCTGTTGTTTTCTGTTCTTTCTTTTTCTCACCAAATACTTGAGCAAGAAGAAATCAATCTTCTTCTGGATAAATGCATTGGCGCCTTTGACTTCCGTCATCTTGGGAAGCCTTCTCGTGTACTTCACCCACGCTGAAAAGCATGGAGTTCAAGTGATTGGGCATTTGAAGAAAGGGTTGAATCCCCCATCTGTTTCTGATTTAGTTTTTGGATCTCCCCATCTCGCCATCGCCATCAAAACCGGGATCATCGTCGGAGTCATCGGCCTTGCTGAAGGTGTTGCAGTGGGAAGAAGTTTTGCTGCATTTAAGAACTACCATATTGATGGCAACAAGGAGATGATTGCATTTGGGGTGATGAACATTGTTGGTTCCTGCACTTCTTGCTACCTCACTGCAGGGCCGTTTTCGAGGAGTGCTGTGAATTTCAATGCAGGATGTAAGACAGCAGTCTCGAATATCGTCATGTCAATTGCTCTGATGCTCACTCTGTTGTTTTTGACACCATTTTTTCATTACACGCCCCTGGTGGTACTCTCCTCCATAATCATCACTGCTATGCTTGGCCTAATCAACTACGAAGAAGTCATCCACCTTTGGAAAATCGACAAATTTGACTTCGTTGTCTGCCTCGGTGCATATATCGGTGTCGTCTTTGGCAGTGTTGAAACAGGCTTGATCATTGCGATTGCACTTTCCGTGTTAAGGGTGCTTCTCGTGATTGCAAGGCCAAGAACTTTAGTGCTAGGCAACATTCCCAACTCCACAATTTACAGAAGCATTGATCAATACCAAACAGCTAACCGTGTGCCTGGAATCCTCATCCTTCAATTGGAAGCACCAATCTATTTTGCCAACTCAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACAGATGAAGAAGAGAGGATAAAATTATCAGGAGAAACCAGCTTGCAGTACATAATTCTTGACGTTTCCGGCGTAAGTAGCATAGACTCAAGTGGGATCAGCATGCTTAAAGAGATTAAGAAGAGTATTGAAAGAAAGGGTCTCAAACTTGTGCTTGCAAATCCGAAAAGCGAAGTGATCAAAAAGCTAAACAAGTCGAAGTTTATCGAGGCGGTCGGGCAGGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACAGCCTGCAACTTCATGCTACACACATGTAAGCCAAATCCTGTAGCTGCTGAATTAGATTCACCTATGAACAATGTCTAA 1950 45.9 MGNADFECPHRVAIPPTKPFLESLGSNLKETFFPDDPFKQFKNHPLAAQILLWLKYFIPILEWGPRYNLDFFKADLVSGITIASLAVPQGISYASLASIPPIIGLYSSFIPPLIYAMLGSSRDVAVGTVAVASLLMAAMMGKEVSPVEHPKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGIMGLVHFTHETDIVSVMTSVFSQIHQWRWESIVLGCCFLFFLFLTKYLSKKKSIFFWINALAPLTSVILGSLLVYFTHAEKHGVQVIGHLKKGLNPPSVSDLVFGSPHLAIAIKTGIIVGVIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGVMNIVGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMSIALMLTLLFLTPFFHYTPLVVLSSIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLIIAIALSVLRVLLVIARPRTLVLGNIPNSTIYRSIDQYQTANRVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKLSGETSLQYIILDVSGVSSIDSSGISMLKEIKKSIERKGLKLVLANPKSEVIKKLNKSKFIEAVGQEWIYLTVGEAVTACNFMLHTCKPNPVAAELDSPMNNV 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5988047 5993201 - Sed0024172.1 Sed12g0962 731918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0962 649 Pfam STAS domain 506 622 IPR002645 -
Sed12g0962 649 SUPERFAMILY SpoIIaa-like 509 626 IPR036513 -
Sed12g0962 649 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Sed12g0962 649 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Sed12g0962 649 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Sed12g0962 649 Gene3D STAS domain 483 628 IPR036513 -
Sed12g0962 649 PANTHER SULFATE TRANSPORTER 48 626 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g0962 649 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g0962 649 FunFam Sulfate transporter 31 483 629 - -
Sed12g0962 649 Pfam Sulfate permease family 72 451 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0962 Sed-Chr12:5988047 Sed12g1857 Sed-Chr12:29818860 1.00E-198 dispersed
Sed12g0962 Sed-Chr12:5988047 Sed02g1339 Sed-Chr2:49724196 0.00E+00 wgd
Sed12g0962 Sed-Chr12:5988047 Sed09g1100 Sed-Chr9:34958780 3.70E-273 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0962 K17471 - csv:101203205 1134.01