Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0977 ATGCAGCTTCTTAGCGCTGAAGAAACGGTGGCCGACTCGTCGGAAAGCGGCGCTGTGGAGGCAGCGATTTTGAAATCTTCGGAGCTGGGTTCGTTTGAGGACCACGATGGAAGCGGGGCGGATGATGATTTGGTTCTTGATGTCTCGGGGAGAAACTTGGATTCCCACTTCTTGGAGGGTTCCACCAGCTCAGTGAAGGGTTTGTACGTGTTTAGGAATGTGTTCAATTTGATTCCGAAATCAGTCGGCGAATTTAGGAAATTGCGAATGCTGAAGTTCTTTGGAAACGAGATTCATTTGTTTCCGCCGGAGTTGAAGAACTTTGTGGGGTTGGAATGCTTGCAGGTGAAGTTGTCATCACCGGGTTTTGGTGGTTTATCGTTACATGAATTGAAGGGTTTAAAGGAGCTCGAGCTGTCGAAGATTCCTCCTAAACCTTCATCGTTTCCAATTCTTAGTGAGATTGCTGGCCTCAAGTGTTTGACTAAGCTCACTGTTTGTCACTTTTCTATTAGATTTCTTCCTCCTGAAATTGGCTGCCTGAATAGTTTGGAGTATCTAGATCTCTCATTTAATAAGATGAAGAGCCTTCCAGCAGAAATAGGCTATTTGAATGCATTGATATCCTTAAGAGTTGCCAATAACAAATTGGTGGAACTACCTCTGGCTCTATCCTCCCTGCTAAAGTTAGAGAACTTGGACCTATCAAGTAATAGGTTAACATCATTGGGGTCTCTTGAACTCCTATCTATGCATAGCCTTAAAAACTTAAATTTACAGTACAATAAGTTTCTAAGAAGCTGTCAGATACCCTCCTGGATATGTTGCAATCTTGAAGGAGATTGTGGAGAAGAATCTATTAGTTCTACAGTAGAAATGGATGTTTATGAAGAAGGCACCATTCCAGACAATAGTGATAATTTCCCCCATAAAGGTACTCGCAATTTATCATCAAACCTATTGATGGGAGCTTCAACGAGTAGAGCTTTTGCATCCCGAAGATCAGGTAAGCGATGGCGGAGACGACATTTTTTGCAGCAGAAAGCTCGCCAAGAACGTTTGAATAGCAGCAGGAAGTGGAAAGGTGTAGATCATCATACTGAAGTAAAGATCAATGAGAAGCATGAACTTGGGAGGCTCGATACATCTACTTCTGAAGTTACTGTTGAAGATTCTTCGGTTATTGAGGAGTTATATGATAGTAAAGAAACCTGTCACGGAGAAGCTGAAAGTGAAAGTCTTATTTTGAGCCACGAGAATGACAATTATGATCTAAAAAAGGAACTTTCTGTGGAGAATAGCTCAACTATCCGTGTTAGTGCCACTGAAACAACGACAAGGGATGAAAATGAATGTTGTGAGTCCAGCGGGGCTTTGCTGCCAACAGGAAATGGAGCACATGACCAAGAAGGGTCTTCTTCCCAAGTATCGAAGGATAATGCTACGTTGAAAAGATATTCTGAGAGGGAACCTGATAATCCTAAACCTTGCAAGTCAAGAAAGGCAGCTGAAGATAGCTCAAGTTTATCTTGCAAGTACAATAGTATTTCATTTTGCAGTGGTGAGGATCATCTACCTGATGGGTTTTATGACGCAGGGCGTGATCGTCCCTTCATGCCATTAAGGAATTATGAGCAAAATTTCCATCTTGATTCACGTGAAGTCATTCTTGTCAACAGGGAACATGATGAATTATTAGACTCTACAGTAATATCTGCCAAGTCATTGGTGCTCCGTCTAAAGCAGATCAACCAAACTCAAGAGAGACATCAAGTTCTTGATGACGTGTATATTGCACAAGTACTTGCTTTATTTGTATCTGATCATTTTGGAGGAAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAAAGCTGTTTCTGGTTCAAGGTATCAGAAGCCTTTTGTCTGCACCTGTTCAACTGGAGATCGCAATAATCTTACTGCGTCCACTAAATTAACGGCGGATAATTATGAGGATATTCTTTTTACTGATATCTGTGAGAGGTCTCTCCGTGCTATTAAAGCTAGTCGAAATTCCATCATAGTTCCTCTAGGAGCTCTGCAGTTTGGTGTGTGCAGACATAGAGCGGTGCTTCTTAAGTATTTGTGTGATCGCATGGAGCCTGCGATACCTTGCGAGCTTGTGAGAGGTTACTTGGATTTCTTACCTCATGCTTGGAACACGATCTTAGTAAAAAGAGGTAATGCTTTGGTTCGAATGGTTGTTGATGCATGTCGACCGAATGATATACGAGAAGAAGCAGATCCGGAGTATTTTTGCAGGTACATTCCTCTCAGTCGTGCCAAACTACCTATTTCTTTTGGAATGGTGCCCAGTACAGGGTTTTCTTTTCCGTCTCTTTCCAATTGTGATGAGATTGAGAAGGCACCGTCTAGTTCTGTGATGAAGTGTAAACTTGGGTCAGTTGAGGCTGCAGCCAAGTTACGGACGCTTGAAGTTTGTGAATCTTCATTTGATGAGATAAGGAACTTTGAATTCAGTTGCTTAGGTGAAGTTAGAATACTGGGTGCTTTGAAACACTCCTGCATAGTTCAGATGTATGGACATCAGATATCTTCTGAATGGATTTCTTCTGAGGATGGAAAACCGAAGCGTCGGTTACTTAAGTCTGCAATTTTTTTAGAGCATGTTAAAGGGGGATCCTTGAAGAGCTACATGAACAAGTTGTACCAAGCTGGGAAAAAATACCTTCCATTGGATCTGGCGTTGCATGTAGCTCGAGATGTTGCAAGTGCTTTGGCAGAACTGCATTCGAAACACATCATTCATCGAGACATCAAAAGTGAAAATATTTTGATCGATTTTGATGAAAAATCGGATGGTGTTCCAATCATCAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTTGTTGCACACTTGTTGCATTGCTCATACTGGAATCCCTTCTCCTAATGTTTGTGTTGGAACACCTCGATGGATGGCTCCAGAAGTTCTTCGAGCAATGCATACACCAAATGTTTATGGACTGGAAGTGGATATTTGGTCGTTTGGATGTCTGTTATTTGAACTGTTGACCTTGCAAATTCCATACTTCGGGCTGACAGAATTGCAGATATTCGATCACCTTCAGATGGGTAAACGACCAGAATTGACCAGTGAACTTGAGGAGGCATTGGGGTCGACAAAGGAAAGCTCAATGTCTCAATCCGTTCGAGAATCAGATGTCTCAGAGAAAGACCAAGAAACTACAGCATTCTTGTTCGACTTGTTTTGCAAGTGTACTCAGAAAAACCCGGACGACCGACCAACAGCTGAAGAACTTCACAAAATTCTACTCGAGCACACAGCCAAGGTGAAATCTTTACATAAACTAGATACATGA 3375 42.01 MQLLSAEETVADSSESGAVEAAILKSSELGSFEDHDGSGADDDLVLDVSGRNLDSHFLEGSTSSVKGLYVFRNVFNLIPKSVGEFRKLRMLKFFGNEIHLFPPELKNFVGLECLQVKLSSPGFGGLSLHELKGLKELELSKIPPKPSSFPILSEIAGLKCLTKLTVCHFSIRFLPPEIGCLNSLEYLDLSFNKMKSLPAEIGYLNALISLRVANNKLVELPLALSSLLKLENLDLSSNRLTSLGSLELLSMHSLKNLNLQYNKFLRSCQIPSWICCNLEGDCGEESISSTVEMDVYEEGTIPDNSDNFPHKGTRNLSSNLLMGASTSRAFASRRSGKRWRRRHFLQQKARQERLNSSRKWKGVDHHTEVKINEKHELGRLDTSTSEVTVEDSSVIEELYDSKETCHGEAESESLILSHENDNYDLKKELSVENSSTIRVSATETTTRDENECCESSGALLPTGNGAHDQEGSSSQVSKDNATLKRYSEREPDNPKPCKSRKAAEDSSSLSCKYNSISFCSGEDHLPDGFYDAGRDRPFMPLRNYEQNFHLDSREVILVNREHDELLDSTVISAKSLVLRLKQINQTQERHQVLDDVYIAQVLALFVSDHFGGSDRSAMVEKTRKAVSGSRYQKPFVCTCSTGDRNNLTASTKLTADNYEDILFTDICERSLRAIKASRNSIIVPLGALQFGVCRHRAVLLKYLCDRMEPAIPCELVRGYLDFLPHAWNTILVKRGNALVRMVVDACRPNDIREEADPEYFCRYIPLSRAKLPISFGMVPSTGFSFPSLSNCDEIEKAPSSSVMKCKLGSVEAAAKLRTLEVCESSFDEIRNFEFSCLGEVRILGALKHSCIVQMYGHQISSEWISSEDGKPKRRLLKSAIFLEHVKGGSLKSYMNKLYQAGKKYLPLDLALHVARDVASALAELHSKHIIHRDIKSENILIDFDEKSDGVPIIKLCDFDRAVPLRSLLHTCCIAHTGIPSPNVCVGTPRWMAPEVLRAMHTPNVYGLEVDIWSFGCLLFELLTLQIPYFGLTELQIFDHLQMGKRPELTSELEEALGSTKESSMSQSVRESDVSEKDQETTAFLFDLFCKCTQKNPDDRPTAEELHKILLEHTAKVKSLHKLDT 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6108739 6116490 + Sed0001129.1 Sed12g0977 731933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0977 1124 MobiDBLite consensus disorder prediction 466 481 - -
Sed12g0977 1124 Gene3D Ribonuclease Inhibitor 44 282 IPR032675 -
Sed12g0977 1124 PRINTS Leucine-rich repeat signature 227 240 - -
Sed12g0977 1124 PRINTS Leucine-rich repeat signature 184 197 - -
Sed12g0977 1124 SMART LRR_typ_2 181 204 IPR003591 -
Sed12g0977 1124 SMART LRR_typ_2 227 250 IPR003591 -
Sed12g0977 1124 MobiDBLite consensus disorder prediction 1056 1075 - -
Sed12g0977 1124 Gene3D Transferase(Phosphotransferase) domain 1 785 1122 - -
Sed12g0977 1124 MobiDBLite consensus disorder prediction 438 501 - -
Sed12g0977 1124 ProSiteProfiles Leucine-rich repeat profile. 229 250 IPR001611 GO:0005515(InterPro)
Sed12g0977 1124 Pfam Ethylene-responsive protein kinase Le-CTR1 668 735 - -
Sed12g0977 1124 MobiDBLite consensus disorder prediction 482 501 - -
Sed12g0977 1124 SMART serkin_6 788 1110 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0977 1124 ProSiteProfiles Protein kinase domain profile. 788 1109 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0977 1124 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0977 1124 SUPERFAMILY Protein kinase-like (PK-like) 785 1109 IPR011009 -
Sed12g0977 1124 SUPERFAMILY L domain-like 59 274 - -
Sed12g0977 1124 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 210 1112 - GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Sed12g0977 1124 SMART LRR_bac_2 204 223 - -
Sed12g0977 1124 SMART LRR_bac_2 227 246 - -
Sed12g0977 1124 SMART LRR_bac_2 181 200 - -
Sed12g0977 1124 ProSiteProfiles Leucine-rich repeat profile. 183 204 IPR001611 GO:0005515(InterPro)
Sed12g0977 1124 Pfam Protein kinase domain 834 1106 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0977 1124 FunFam Leucine-rich repeat protein kinase family protein 834 1115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0977 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0977 Sed-Chr12:6108739 Sed05g2202 Sed-Chr5:34825792 1.90E-19 dispersed
Sed12g0977 Sed-Chr12:6108739 Sed04g3824 Sed-Chr4:46695465 6.60E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79985 PF00069 Pkinase 3.30E-37 CL0016 Sed PK