Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0978 | ATGCCGGTACGGCAAATGAAGGAGAGCTCCGAGCAGCACCTTGTGATCAAAACCCACTTTCAAAACTCTGTTCAAAAAGCTCCAAAATCAACCCAAAATGGCAAAGGCCCGCCTAATCTAGAACCCCAAAGCATCAAATCTCGAAACCCATCTTCCCCTCCGAGCAAAAACAGGGGCCGGCGAAGGAGCCGAGGCGGCCGGAAATCCGATCAGGGAGAAGTGTTTATGAGGCCGAGCTCTCGGCCCTGCACGGCGACGCTTAAACCCGACGCACCGGAGTTCTCGGCCGGAGCCCTCATGGCGAGTACGAATCCGAATCCGAATGGTGCAAGCATTTGTGGGATGGAAATTGGTTTAAGAAATTCAAGAAAGTCTGTGAGTTTTACTCCAAGGCCTGGATTTGGACAAGTTGGGACAAAGTGTATTGTAAAAGCAAACCATTTCTTTGCAGAGTTACCAGACAAAGATTTGAATCAATATGATGTTACAATTAGTCCTGAAGTGGCATCACGAACTGTGAACAGAGCCATCATGGCTGAATTGGTGCGAATATATCGAGAATCTGATCTCGTAAACAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTCTGGAAAGAGTTTAACATCAAGCTTGTGGATGAAGAAGATGGAGCCAGTGGTCCCAAAAGGGAGAGGGAATATAAAGTGATTATTAAGTTTGTTGCGCGTGCCAATTTACACCATTTGGGGCAGTTTCTTGCCGGTAAGCGTGCTGATGCTCCTCAAGAAGCTCTTCAAATTTTGGACATTGTATTAAGAGAGCTGTCATCCAAAAGGTACTGTCCTATAGGGAGATCTTTCTTTTCCCCTGATATTAGAACACCTCAACGGCTCGGTGATGGGCTAGAATCATGGTGCGGTTTTTACCAGAGTATAAGACCTACTCAAATGGGACTTTCTCTAAACATTGATATGGCTTCAGCTGCTTTTATAGAGCCTCTACCTGTCCTTGAGTTTGTTGCTCAGCTTCTAGGGAAAGATGTGTTGTCCCGGCCATTATCCGACTCAGATCGCATAAAGATAAAAAAGGCTCTAAGAGGGGTGAAAGTTGAAGTAACGCACCGAGGAAATGTTAGGCGGAAGTATCGAGTTTCGGGTCTGACATCACAGCCTACAAGAGAACTAGTGTTTCCTGTCGATAATGATGACAATTCGACCATGAAGTCAGTTGTTGAGTACTTCCAAGAGATGTATGGCTTCACCATTCAACATGCCCATCTCCCTTGCCTTCAAGTAGGGAACCAGAAGAAGGCAAATTATTTACCAATGGAGGCCTGTAAAATTGTAGGGGGGCAAAGATATACAAAGAGATTAAATGAGAAGCAAATAACAGCCCTTTTAAAAGTCACGTGTCAAAGACCTAGGGATCGCGAAAATGACATTTTGCAGACGGTTCGACATAACGCCTATTACAACGATCCTTATGCAAAGGAGTTCGGGATTAAAATTAGTGAAAAGCTTGCTTCTGTTGAAGCTAGAATTCTTCCTCCCCCATGGCTGAAATATCATGATACTGGAAAAGAGAAGGATTGCTTACCCCAAGTGGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGGATGACAGTTAATCGGTGGGCATGTATCAACTTCTCTCGGAGTGTGCAAGAGAGTGTTGCTCGCGGGTTTTGTTCCGAACTTGCTCAGATGTGTCAAGTTTCTGGAATGGAGTTCAATCTAGAACCAGTTATTCCAATTTACAATGCAAGGCCAGAACAAGTAGAGAAAGCTTTGAAGCATGTTTATCACGCTTCTATGAACAAGACGAAAGGAAAAGAGTTAGAGCTAGTATTAGCCATTTTACCTGACAACAACGGTTCACTTTACGGTGATCTAAAGCGAATTTGTGAAACTGATCTCGGTTTAATATCACAATGTTGTCTTACAAAACACGTGTTCAAGATTAGTAAGCAGTACCTCGCTAATGTTTCGCTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATCAGTTACAGGATACCGCTTGTGAGCGATATACCGACAATAATATTTGGAGCAGACGTGACCCATCCAGAGAACGGCGAAGACTCCAGCCCTTCAATAGCTGCTGTTGTGGCCTCTCAGGATTGGCCGGAAGTGACAAAATATGCTGGACTAGTTTGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTATAAAACTTGGCAGGATCCGGTTCGTGGAACCGTTAGTGGTGGCATGATCAGGGATCTTCTGATTTCCTTTAGGAAAGCAACAGGGCAGAAGCCTCTAAGAATAATATTTTACAGGGATGGCGTAAGCGAAGGACAATTCTATCAAGTATTACTTTATGAGTTGGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACCGAATTACCAACCACCCGTAACGTTCATTGTCGTACAAAAACGACACCACACTCGATTATTTGCCAATAACCATAGAGACAGAAGTAGCACAGACAGGAGTGGAAACATTTTGCCTGGCACTGTAGTTGACTCCAAAATATGCCACCCAACAGAATTTGATTTCTATCTCTGTAGCCATGCTGGAATTCAGGGGACGAGCCGGCCAGCGCACTACCATGTTCTTTGGGATGAAAACAATTTTACTGCAGATGGTATTCAGTCGTTAACGAACAATCTTTGCTACACGTATGCAAGGTGTACACGTTCGGTTTCCGTCGTCCCTCCAGCATACTATGCACATTTAGCAGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAGGAGAATGGCTCAGGTGGTCGTTCTACCAAGAGTACACGCACTACCGACGAGATTGGGGTTCGTCCCTTGCCAGCTCTCAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG | 2967 | 44.25 | MPVRQMKESSEQHLVIKTHFQNSVQKAPKSTQNGKGPPNLEPQSIKSRNPSSPPSKNRGRRRSRGGRKSDQGEVFMRPSSRPCTATLKPDAPEFSAGALMASTNPNPNGASICGMEIGLRNSRKSVSFTPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTISPEVASRTVNRAIMAELVRIYRESDLVNRLPAYDGRKSLYTAGELPFVWKEFNIKLVDEEDGASGPKREREYKVIIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDSDRIKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDNDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVRHNAYYNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNLEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELVLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISYRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSGGRSTKSTRTTDEIGVRPLPALKENVKRVMFYC | 988 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 6126796 | 6134552 | - | Sed0014071.1 | Sed12g0978 | 731934 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0978 | 988 | ProSiteProfiles | PAZ domain profile. | 337 | 452 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed12g0978 | 988 | FunFam | protein argonaute 10-like | 695 | 988 | - | - | |
Sed12g0978 | 988 | MobiDBLite | consensus disorder prediction | 18 | 90 | - | - | |
Sed12g0978 | 988 | SUPERFAMILY | Ribonuclease H-like | 614 | 947 | IPR012337 | - | |
Sed12g0978 | 988 | Pfam | Piwi domain | 626 | 946 | IPR003165 | GO:0003676(InterPro) | |
Sed12g0978 | 988 | Gene3D | paz domain | 329 | 456 | - | - | |
Sed12g0978 | 988 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 131 | 974 | - | GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER) | |
Sed12g0978 | 988 | CDD | PAZ_argonaute_like | 335 | 451 | - | - | |
Sed12g0978 | 988 | Pfam | Argonaute linker 2 domain | 478 | 524 | IPR032472 | - | |
Sed12g0978 | 988 | CDD | Piwi_ago-like | 496 | 946 | IPR045246 | - | |
Sed12g0978 | 988 | ProSiteProfiles | Piwi domain profile. | 626 | 947 | IPR003165 | GO:0003676(InterPro) | |
Sed12g0978 | 988 | Gene3D | - | 516 | 689 | - | - | |
Sed12g0978 | 988 | Pfam | Mid domain of argonaute | 535 | 612 | IPR032473 | - | |
Sed12g0978 | 988 | SMART | DUF1785_2 | 283 | 335 | IPR014811 | - | |
Sed12g0978 | 988 | MobiDBLite | consensus disorder prediction | 18 | 54 | - | - | |
Sed12g0978 | 988 | Pfam | N-terminal domain of argonaute | 140 | 274 | IPR032474 | - | |
Sed12g0978 | 988 | SMART | PAZ_2_a_3 | 340 | 474 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed12g0978 | 988 | FunFam | Protein argonaute-2 | 329 | 457 | - | - | |
Sed12g0978 | 988 | SUPERFAMILY | PAZ domain | 330 | 491 | IPR036085 | GO:0005515(InterPro) | |
Sed12g0978 | 988 | SMART | Piwi_a_2 | 626 | 947 | IPR003165 | GO:0003676(InterPro) | |
Sed12g0978 | 988 | Gene3D | - | 695 | 988 | IPR036397 | GO:0003676(InterPro) | |
Sed12g0978 | 988 | FunFam | Argonaute 10 | 516 | 689 | - | - | |
Sed12g0978 | 988 | Pfam | PAZ domain | 361 | 468 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed12g0978 | 988 | Pfam | Argonaute linker 1 domain | 284 | 334 | IPR014811 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1350 | Sed-Chr2:49802944 | Sed12g0978 | Sed-Chr12:6126796 | 0.00E+00 | dispersed | |
Sed02g1351 | Sed-Chr2:49802944 | Sed12g0978 | Sed-Chr12:6126796 | 0.00E+00 | dispersed | |
Sed05g1890 | Sed-Chr5:32328484 | Sed12g0978 | Sed-Chr12:6126796 | 1.50E-136 | dispersed | |
Sed05g1891 | Sed-Chr5:32328484 | Sed12g0978 | Sed-Chr12:6126796 | 2.90E-125 | dispersed | |
Sed08g0735 | Sed-Chr8:5398138 | Sed12g0978 | Sed-Chr12:6126796 | 0.00E+00 | dispersed | |
Sed08g2037 | Sed-Chr8:34619182 | Sed12g0978 | Sed-Chr12:6126796 | 0.00E+00 | transposed | |
Sed12g0978 | Sed-Chr12:6126796 | Sed02g1347 | Sed-Chr2:49802944 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0978 | K11593 | - | csv:101221352 | 1862.43 |