Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0978 ATGCCGGTACGGCAAATGAAGGAGAGCTCCGAGCAGCACCTTGTGATCAAAACCCACTTTCAAAACTCTGTTCAAAAAGCTCCAAAATCAACCCAAAATGGCAAAGGCCCGCCTAATCTAGAACCCCAAAGCATCAAATCTCGAAACCCATCTTCCCCTCCGAGCAAAAACAGGGGCCGGCGAAGGAGCCGAGGCGGCCGGAAATCCGATCAGGGAGAAGTGTTTATGAGGCCGAGCTCTCGGCCCTGCACGGCGACGCTTAAACCCGACGCACCGGAGTTCTCGGCCGGAGCCCTCATGGCGAGTACGAATCCGAATCCGAATGGTGCAAGCATTTGTGGGATGGAAATTGGTTTAAGAAATTCAAGAAAGTCTGTGAGTTTTACTCCAAGGCCTGGATTTGGACAAGTTGGGACAAAGTGTATTGTAAAAGCAAACCATTTCTTTGCAGAGTTACCAGACAAAGATTTGAATCAATATGATGTTACAATTAGTCCTGAAGTGGCATCACGAACTGTGAACAGAGCCATCATGGCTGAATTGGTGCGAATATATCGAGAATCTGATCTCGTAAACAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTCTGGAAAGAGTTTAACATCAAGCTTGTGGATGAAGAAGATGGAGCCAGTGGTCCCAAAAGGGAGAGGGAATATAAAGTGATTATTAAGTTTGTTGCGCGTGCCAATTTACACCATTTGGGGCAGTTTCTTGCCGGTAAGCGTGCTGATGCTCCTCAAGAAGCTCTTCAAATTTTGGACATTGTATTAAGAGAGCTGTCATCCAAAAGGTACTGTCCTATAGGGAGATCTTTCTTTTCCCCTGATATTAGAACACCTCAACGGCTCGGTGATGGGCTAGAATCATGGTGCGGTTTTTACCAGAGTATAAGACCTACTCAAATGGGACTTTCTCTAAACATTGATATGGCTTCAGCTGCTTTTATAGAGCCTCTACCTGTCCTTGAGTTTGTTGCTCAGCTTCTAGGGAAAGATGTGTTGTCCCGGCCATTATCCGACTCAGATCGCATAAAGATAAAAAAGGCTCTAAGAGGGGTGAAAGTTGAAGTAACGCACCGAGGAAATGTTAGGCGGAAGTATCGAGTTTCGGGTCTGACATCACAGCCTACAAGAGAACTAGTGTTTCCTGTCGATAATGATGACAATTCGACCATGAAGTCAGTTGTTGAGTACTTCCAAGAGATGTATGGCTTCACCATTCAACATGCCCATCTCCCTTGCCTTCAAGTAGGGAACCAGAAGAAGGCAAATTATTTACCAATGGAGGCCTGTAAAATTGTAGGGGGGCAAAGATATACAAAGAGATTAAATGAGAAGCAAATAACAGCCCTTTTAAAAGTCACGTGTCAAAGACCTAGGGATCGCGAAAATGACATTTTGCAGACGGTTCGACATAACGCCTATTACAACGATCCTTATGCAAAGGAGTTCGGGATTAAAATTAGTGAAAAGCTTGCTTCTGTTGAAGCTAGAATTCTTCCTCCCCCATGGCTGAAATATCATGATACTGGAAAAGAGAAGGATTGCTTACCCCAAGTGGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGGATGACAGTTAATCGGTGGGCATGTATCAACTTCTCTCGGAGTGTGCAAGAGAGTGTTGCTCGCGGGTTTTGTTCCGAACTTGCTCAGATGTGTCAAGTTTCTGGAATGGAGTTCAATCTAGAACCAGTTATTCCAATTTACAATGCAAGGCCAGAACAAGTAGAGAAAGCTTTGAAGCATGTTTATCACGCTTCTATGAACAAGACGAAAGGAAAAGAGTTAGAGCTAGTATTAGCCATTTTACCTGACAACAACGGTTCACTTTACGGTGATCTAAAGCGAATTTGTGAAACTGATCTCGGTTTAATATCACAATGTTGTCTTACAAAACACGTGTTCAAGATTAGTAAGCAGTACCTCGCTAATGTTTCGCTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATCAGTTACAGGATACCGCTTGTGAGCGATATACCGACAATAATATTTGGAGCAGACGTGACCCATCCAGAGAACGGCGAAGACTCCAGCCCTTCAATAGCTGCTGTTGTGGCCTCTCAGGATTGGCCGGAAGTGACAAAATATGCTGGACTAGTTTGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTATAAAACTTGGCAGGATCCGGTTCGTGGAACCGTTAGTGGTGGCATGATCAGGGATCTTCTGATTTCCTTTAGGAAAGCAACAGGGCAGAAGCCTCTAAGAATAATATTTTACAGGGATGGCGTAAGCGAAGGACAATTCTATCAAGTATTACTTTATGAGTTGGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACCGAATTACCAACCACCCGTAACGTTCATTGTCGTACAAAAACGACACCACACTCGATTATTTGCCAATAACCATAGAGACAGAAGTAGCACAGACAGGAGTGGAAACATTTTGCCTGGCACTGTAGTTGACTCCAAAATATGCCACCCAACAGAATTTGATTTCTATCTCTGTAGCCATGCTGGAATTCAGGGGACGAGCCGGCCAGCGCACTACCATGTTCTTTGGGATGAAAACAATTTTACTGCAGATGGTATTCAGTCGTTAACGAACAATCTTTGCTACACGTATGCAAGGTGTACACGTTCGGTTTCCGTCGTCCCTCCAGCATACTATGCACATTTAGCAGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAGGAGAATGGCTCAGGTGGTCGTTCTACCAAGAGTACACGCACTACCGACGAGATTGGGGTTCGTCCCTTGCCAGCTCTCAAGGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2967 44.25 MPVRQMKESSEQHLVIKTHFQNSVQKAPKSTQNGKGPPNLEPQSIKSRNPSSPPSKNRGRRRSRGGRKSDQGEVFMRPSSRPCTATLKPDAPEFSAGALMASTNPNPNGASICGMEIGLRNSRKSVSFTPRPGFGQVGTKCIVKANHFFAELPDKDLNQYDVTISPEVASRTVNRAIMAELVRIYRESDLVNRLPAYDGRKSLYTAGELPFVWKEFNIKLVDEEDGASGPKREREYKVIIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCPIGRSFFSPDIRTPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDSDRIKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDNDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVRHNAYYNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNLEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELVLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISYRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSGGRSTKSTRTTDEIGVRPLPALKENVKRVMFYC 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6126796 6134552 - Sed0014071.1 Sed12g0978 731934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0978 988 ProSiteProfiles PAZ domain profile. 337 452 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed12g0978 988 FunFam protein argonaute 10-like 695 988 - -
Sed12g0978 988 MobiDBLite consensus disorder prediction 18 90 - -
Sed12g0978 988 SUPERFAMILY Ribonuclease H-like 614 947 IPR012337 -
Sed12g0978 988 Pfam Piwi domain 626 946 IPR003165 GO:0003676(InterPro)
Sed12g0978 988 Gene3D paz domain 329 456 - -
Sed12g0978 988 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 131 974 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Sed12g0978 988 CDD PAZ_argonaute_like 335 451 - -
Sed12g0978 988 Pfam Argonaute linker 2 domain 478 524 IPR032472 -
Sed12g0978 988 CDD Piwi_ago-like 496 946 IPR045246 -
Sed12g0978 988 ProSiteProfiles Piwi domain profile. 626 947 IPR003165 GO:0003676(InterPro)
Sed12g0978 988 Gene3D - 516 689 - -
Sed12g0978 988 Pfam Mid domain of argonaute 535 612 IPR032473 -
Sed12g0978 988 SMART DUF1785_2 283 335 IPR014811 -
Sed12g0978 988 MobiDBLite consensus disorder prediction 18 54 - -
Sed12g0978 988 Pfam N-terminal domain of argonaute 140 274 IPR032474 -
Sed12g0978 988 SMART PAZ_2_a_3 340 474 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed12g0978 988 FunFam Protein argonaute-2 329 457 - -
Sed12g0978 988 SUPERFAMILY PAZ domain 330 491 IPR036085 GO:0005515(InterPro)
Sed12g0978 988 SMART Piwi_a_2 626 947 IPR003165 GO:0003676(InterPro)
Sed12g0978 988 Gene3D - 695 988 IPR036397 GO:0003676(InterPro)
Sed12g0978 988 FunFam Argonaute 10 516 689 - -
Sed12g0978 988 Pfam PAZ domain 361 468 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed12g0978 988 Pfam Argonaute linker 1 domain 284 334 IPR014811 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1350 Sed-Chr2:49802944 Sed12g0978 Sed-Chr12:6126796 0.00E+00 dispersed
Sed02g1351 Sed-Chr2:49802944 Sed12g0978 Sed-Chr12:6126796 0.00E+00 dispersed
Sed05g1890 Sed-Chr5:32328484 Sed12g0978 Sed-Chr12:6126796 1.50E-136 dispersed
Sed05g1891 Sed-Chr5:32328484 Sed12g0978 Sed-Chr12:6126796 2.90E-125 dispersed
Sed08g0735 Sed-Chr8:5398138 Sed12g0978 Sed-Chr12:6126796 0.00E+00 dispersed
Sed08g2037 Sed-Chr8:34619182 Sed12g0978 Sed-Chr12:6126796 0.00E+00 transposed
Sed12g0978 Sed-Chr12:6126796 Sed02g1347 Sed-Chr2:49802944 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0978 K11593 - csv:101221352 1862.43