Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1013 ATGAAATTATTTATTTTGTTTGGTTGTTTTACGACAAAAGTTCCACGAATATTTTATTTCCCCCTTCTGGCGAATCCTTGGTGGACTTCTCAGGTGGGGCTGCCGGAGGTGAATCACCACCACCACCACCCGGCGGCCATAAACTCACCGATCTACAAACAAAGCGATGAAAATAGCGGTAGCCGTGACGAAGACGAGGACGAGCCGAAAGAAGGCGCGGTGGAGGCCGGGACTCGGAGGCCAAGAGGGCGTCCACCTGGATCCAAAAACAAACCAAAACCTCCGATCTTCGTCACCCGCGACAGCCCTAACGCCCTACGGAGCTACGTCCTAGAGGTCGCCGCCGGATCGGATGTGGCGGATTCCATCGCCCAATTCTCCCGGAAGCGCCAACGCGGCGTCTGCGTCCTCAGCGCCACCGGTTTGGTCGCCAACGTCACCTTACGACAGCCCGCGGCCCCCGGTTCGGTAATGCCACTCCAAGGACGGTTCGAGATTCTGTCGTTAACCGGGGCGTTTTTGCCCGGTCCGGCCCCGCCCGGATCCACCGGGCTGACCGTTTACTTGTCCGCCGGTCAGGGGCAGGTGGTCGGCGGGAGCGTGGTGGGGCCGCTTGTGGCCGCCGGAACTATCATGGTAATTGCTGCCACTTTTGCTAATGCCACCTACGAAAGGTTGCCGCTTGAAGATCATGAGGAGCATGAAATGGGTAGTGGTGGCGCAGCCTCGCACGGCGGCGCAAGAAGCCCTCCGCCGGAAATTAGAGGCGGCGGCGGTGGTGGGCAGTTGCCGGAACCGACTTTGCCGTTGTATAATTTGTTGCCGGATATGCTTGGCCACGACGGGTATGCTTATGTCCCGCCACCGTATTGA 873 58.88 MKLFILFGCFTTKVPRIFYFPLLANPWWTSQVGLPEVNHHHHHPAAINSPIYKQSDENSGSRDEDEDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFSRKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSAGQGQVVGGSVVGPLVAAGTIMVIAATFANATYERLPLEDHEEHEMGSGGAASHGGARSPPPEIRGGGGGGQLPEPTLPLYNLLPDMLGHDGYAYVPPPY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6513577 6515581 - Sed0012600.1 Sed12g1013 731969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1013 290 FunFam AT-hook motif nuclear-localized protein 106 233 - -
Sed12g1013 290 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 234 - -
Sed12g1013 290 MobiDBLite consensus disorder prediction 45 98 - -
Sed12g1013 290 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 53 275 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed12g1013 290 Gene3D - 106 237 - -
Sed12g1013 290 CDD DUF296 107 190 IPR005175 -
Sed12g1013 290 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 219 IPR005175 -
Sed12g1013 290 ProSiteProfiles PPC domain profile profile. 103 239 IPR005175 -
Sed12g1013 290 MobiDBLite consensus disorder prediction 231 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0198 Sed-Chr11:1793311 Sed12g1013 Sed-Chr12:6513577 2.00E-77 dispersed
Sed12g0290 Sed-Chr12:1686312 Sed12g1013 Sed-Chr12:6513577 6.90E-56 dispersed
Sed12g1013 Sed-Chr12:6513577 Sed12g2108 Sed-Chr12:31776752 2.60E-53 dispersed
Sed12g1013 Sed-Chr12:6513577 Sed02g1392 Sed-Chr2:50143157 2.60E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1013 - - - 0.0