Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1030 ATGGATTACTCTGCATTCTTCTCCTCCGTCTCCGATTTCTCACCGGCAACATCGTTCGGTTCACCGGAATCATCCTTCATGAATTCAGGCCACAATGTTCTTCCTTTCAACAAGAATGACTCCGAGGAAATGCTTCTGTACGGTTTAATATCGGAGGTGACACCAGGCTCGTCGGAGATGGGTGTCACGGCGGCGCGTGTAAAGGAAGAGGAGGTCGATTCCGTCGGCGGCGAAGAGAACCCGAAAAAGGAAAAGGGTTACAGAGGAGTTCGCCGCCGGCCATGGGGGAAGTTCGCCGCCGAAATCAGGGATTCCACCAGAAACAGCATAAGGGTCTGGTTGGGGACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTTCGATGAGGGGAGCCGCCGCAATTCTCAATTTCTCTGTTGATAGAGTTATGGAGTCCCTCAAAGAAATGAACTTCGGCGGCGACGACGGCGGGTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCGATGAAGAGGAGAAGTGTTAACAAAAAGAGGAAAGAAAGGGATTTGAGGATTCAAAATTTAGTGGTTTTTGAGGATTTAGGAACAGAGTGTTTGGAAGAGCTTTTGGGCTCTTCTCAAAGTGGAAGCCCTTGTTTTTTCTAA 663 50.23 MDYSAFFSSVSDFSPATSFGSPESSFMNSGHNVLPFNKNDSEEMLLYGLISEVTPGSSEMGVTAARVKEEEVDSVGGEENPKKEKGYRGVRRRPWGKFAAEIRDSTRNSIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFSVDRVMESLKEMNFGGDDGGSPVVALKRKHSMKRRSVNKKRKERDLRIQNLVVFEDLGTECLEELLGSSQSGSPCFF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6648317 6649187 + Sed0004339.1 Sed12g1030 731986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1030 220 SMART rav1_2 86 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1030 220 PANTHER DNA-BINDING DOMAIN 51 180 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed12g1030 220 CDD AP2 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1030 220 FunFam Ethylene-responsive transcription factor 2 85 145 - -
Sed12g1030 220 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1030 220 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1030 220 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1030 220 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1030 220 Pfam AP2 domain 86 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1030 220 SUPERFAMILY DNA-binding domain 86 145 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1404 Sed-Chr2:50242121 Sed12g1030 Sed-Chr12:6648317 5.90E-82 dispersed
Sed09g0686 Sed-Chr9:9901087 Sed12g1030 Sed-Chr12:6648317 4.20E-57 dispersed
Sed09g1060 Sed-Chr9:34167373 Sed12g1030 Sed-Chr12:6648317 1.80E-38 dispersed
Sed10g0270 Sed-Chr10:1560065 Sed12g1030 Sed-Chr12:6648317 1.10E-25 dispersed
Sed12g1030 Sed-Chr12:6648317 Sed13g0266 Sed-Chr13:1779156 6.60E-17 dispersed
Sed12g1029 Sed-Chr12:6614093 Sed12g1030 Sed-Chr12:6648317 1.30E-16 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40175 PF00847 AP2 3.70E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1030 K14516 - csv:101210326 309.686