Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1032 ATGGCGAGCGAGCAACTGAAAGTTCTGAACGCGCTCGACGTGGCCAAAACCCAATGGTACCATTTCACCGCCATCGTAATCGCCGGAATGGGATTTTTCACAGACGCCTACGATTTGTTCTGCGTATCACTGGTTACCAAATTGTTAGGCCGGATTTACTATCACAAACCCGGTTCGGATAAGCCCGGCGAGTTGCCCGCCAACGTCGCCGCCGCCGTCAACGGCGTCGCTTTCGTCGGAACCCTCTCCGGCCAGCTCTTCTTCGGCTGGCTCGGCGACAAAATGGGCCGCAAACGAGTCTACGGCATGACCCTCATGCTCATGGTCATCTGCTCCGTCGCCTCCGGCCTCTCCTTCAGCTCCACTCCGACCTCCGTCGTCGCCACCCTCTGTTTTTTCCGTTTCTGGCTCGGCTTCGGCATCGGCGGCGACTACCCCCTCTCCGCCACCATCATGTCCGAATACGCCAATAAAAAAACCAGAGGCGCGTTCATTGCTGCCGTCTTCGCAATGCAGGGGTTTGGAATTCTCGCCGGCGGCGTGGTTGCCATCATCGTCTCCGCCGCTTTCGACGCCAAATACCCCGCTCCGGCCTATAACATAAACGCCGAAGCCTCCACCGTCCCACAAGCGGATTATGTCTGGAGAATCATTGTCATTTTCGGGGCGTTTCCGGCGTTGCTCACTTACTACTGGCGGATGAAGATGCCGGAAACCGCTCGCTACACCGCGTTGGTCGCGAAAAACGCGAAACAGGCGGCGGCCGACATGTCGAAAGTTTTGCAGGTTGAATTAGAAACAGAGCAGGAGAAGATCGACGAGGCGAAATCGAAGAAGGAATTCGGGTTGTTTTCGACGAGATTCGTTCGTCGTCATGGGCTTCATCTTCTCGGAACGACAACCACTTGGTTTCTGCTCGACATTGCGTTTTACAGTCAGAATCTCTTCCAGAAAGACATTTTCACCGCCATCGGCTGGCTTCCGCCGGCGAAGACGATGAGCGCAATCGAAGAGGTGTTCCGAATCGCCAGAGCTCAAACATTAATCGCCTTATGCAGTACGGTTCCTGGGTACTGGTTCACCGTCGGATTAATCGACGTGATCGGCCGATTCGCGATTCAGTTGATGGGATTTTTCTTCATGACAGTGTTCATGTTCGCATTGGCGATTCCGTACCATCACTGGACGTTGGAGGCGAACAGAATTGGGTTTGTTGTGATTTACTCTTTGACGTTTTTCTTTGCGAATTTCGGGCCAAACGCGACGACGTTTGTGGTGCCGGCGGAGATATTTCCGGCTAGGCTCCGGTCGACGTGCCATGGAATATCGGCGGCGTCTGGGAAGGCAGGGGCGATTGTTGGGGCGTTTGGGTTTCAATACGCTGAGAAATTAATTGGGGTGAAAAAGACATTGATAATTCTTGGGGTTGTGAATGGGCTTGGAATGTTGTTTACTTTGTTGGTTCCTGAATCCAAGGGCAAATCTCTCGAAGAAATGTCCGGTGAAGCTGGTGATGAGATTGAGAGCAGAACAGAGCATAGAACTACGCCGGTTTAA 1557 53.31 MASEQLKVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYHKPGSDKPGELPANVAAAVNGVAFVGTLSGQLFFGWLGDKMGRKRVYGMTLMLMVICSVASGLSFSSTPTSVVATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGVVAIIVSAAFDAKYPAPAYNINAEASTVPQADYVWRIIVIFGAFPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELETEQEKIDEAKSKKEFGLFSTRFVRRHGLHLLGTTTTWFLLDIAFYSQNLFQKDIFTAIGWLPPAKTMSAIEEVFRIARAQTLIALCSTVPGYWFTVGLIDVIGRFAIQLMGFFFMTVFMFALAIPYHHWTLEANRIGFVVIYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFQYAEKLIGVKKTLIILGVVNGLGMLFTLLVPESKGKSLEEMSGEAGDEIESRTEHRTTPV 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6680763 6685523 + Sed0004887.1 Sed12g1032 731988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1032 518 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 493 IPR020846 GO:0022857(InterPro)
Sed12g1032 518 Gene3D MFS general substrate transporter like domains 20 516 IPR036259 -
Sed12g1032 518 MobiDBLite consensus disorder prediction 498 518 - -
Sed12g1032 518 NCBIfam phosphate:H+ symporter 11 502 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Sed12g1032 518 CDD MFS_PhT 25 492 - -
Sed12g1032 518 Pfam Sugar (and other) transporter 26 500 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed12g1032 518 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 498 - -
Sed12g1032 518 SUPERFAMILY MFS general substrate transporter 12 500 IPR036259 -
Sed12g1032 518 Coils Coil 258 278 - -
Sed12g1032 518 FunFam Inorganic phosphate transporter 1-6 20 514 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0963 Sed-Chr7:7038812 Sed12g1032 Sed-Chr12:6680763 8.60E-185 dispersed
Sed12g1032 Sed-Chr12:6680763 Sed13g0089 Sed-Chr13:566724 6.90E-182 dispersed
Sed01g2401 Sed-Chr1:18018905 Sed12g1032 Sed-Chr12:6680763 5.40E-145 transposed
Sed12g1032 Sed-Chr12:6680763 Sed02g1407 Sed-Chr2:50261134 9.50E-232 wgd
Sed12g1032 Sed-Chr12:6680763 Sed04g1985 Sed-Chr4:34407701 2.60E-229 wgd
Sed12g1032 Sed-Chr12:6680763 Sed05g0108 Sed-Chr5:655102 5.40E-227 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1032 K08176 - csv:101209582 894.804