Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1050 ATGCGATTCGAAAAGCACATTTGGAAAAATAAAACAATTTCCAGTTTATTTTCTGTTCTCCGGATCTCCGTCGATACTGCAGTTTCGACGCACGAAATTGGCGGCAAAAGCAATTTAGGGCACACGAAGAAGAAGAAGAAGCTGTCAATGGAGATGGTAGCCGAGAAGAACGACAAGAACAAGCTCAACTCTGCTCTAGCAGTTCTTGATTCTCCATATCCACACTCAGTAGCTGCTTATGATTATGGTAGCTATAACAATTCCAAAGAAGTTGAAGATTTAAGCGAACGCGTTGCTCAAGATCTCAAACGCGGCCTTCATCCTCTAAAGCACAAGTTTTCATTTTGGTACACTCGTCGAACACCTGGAATTCGGACTCAAACATCATATGAGGACAACATAAAAAAGATTGTGGAATTTAGCTCGGCTGAAGGTTTTTGGGTAAGCTATTGCCATTTGGCCCGTCCTTCTTCATTGCCAAGCCCGACAGATCTGCATCTCTTTAAGGAAGGAATCTGTCCACTTTGGGAGGATTCTGCTAACTGCAATGGTGGAAAGTGGATAATACGATTGAAGAAAGTTGTATCTGGTCGATTTTGGGAAGATTTGGTTCTTGCATTAGTGGGTGACCAGCTTGCTTTCAGTGATAACATTTGTGGTGTCGTGCTTACCATTCGTTTCAACGAGGATATTTTGAGTGTCTGGAACCGCAATGCATCCGATCATCAGGCAGTGATTGGTCTGCAAGATTCGATCAAACAACACTTAAAGCTCCCTCATGGGTACGTAATGGAATACAAACCCCACGATGCATCTCTTCGTGATAACTCGTCATACAGAAACACATGGTTGCGAGGGTAA 861 43.09 MRFEKHIWKNKTISSLFSVLRISVDTAVSTHEIGGKSNLGHTKKKKKLSMEMVAEKNDKNKLNSALAVLDSPYPHSVAAYDYGSYNNSKEVEDLSERVAQDLKRGLHPLKHKFSFWYTRRTPGIRTQTSYEDNIKKIVEFSSAEGFWVSYCHLARPSSLPSPTDLHLFKEGICPLWEDSANCNGGKWIIRLKKVVSGRFWEDLVLALVGDQLAFSDNICGVVLTIRFNEDILSVWNRNASDHQAVIGLQDSIKQHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRG 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6856684 6861320 + Sed0028221.1 Sed12g1050 732006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1050 286 Gene3D RNA Cap, Translation Initiation Factor Eif4e 81 279 IPR023398 -
Sed12g1050 286 SUPERFAMILY eIF4e-like 103 282 IPR023398 -
Sed12g1050 286 ProSitePatterns Eukaryotic initiation factor 4E signature. 164 187 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Sed12g1050 286 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 64 274 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Sed12g1050 286 Pfam Eukaryotic initiation factor 4E 108 266 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1050 Sed-Chr12:6856684 Sed02g0891 Sed-Chr2:46422383 1.10E-117 wgd
Sed12g1050 Sed-Chr12:6856684 Sed04g2012 Sed-Chr4:34586625 1.20E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1050 K03259 - csv:101204290 402.905