Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1058 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGACCAACCTTCTAGAGGAGGAGACATTGAGCTTGGAAATGCTCCTACTAGTGCAGGGGATCTGGGCCTGGATGATTTCTTTAAAAAGGTCCAAGAGATTGAAAAAAAAAACAAGCAGCTAGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACCAAGGCTCCAGCAATGAAAGCAATCAAGCTGCGAATGGAAAAGGATGTTGATGAAGTTGGAAAAGTTGCACGTTCTGTGAAGACCAAAGTCGAAGACCTTGACAAAGAGAATCTGGCAAATAGGCAGAGGCCTGGGTGTGGCAAAGGATCAGGTGTAGATAGATCGAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATTTTACGTGAAAAAATCAGTCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCACTAGAGCTGACGAAAAGACCATCGAGAAATTAATTGAAACTGGGGATAGCGAGCAAATCTTTCAAAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGATACTCTAGCTGAAATTCAAGAGCGTCACACTGCAGTGAGAGAACTAGAGAGGAAGTTACTCGAACTACAGCAGGTATTTCTGGACATGGCAGTATTGGTAGATGCACAAGGAGACATGCTTGACAATATTGAATCACATGTGACAAGTGCAGTAGATCATGTGCAACAAGGGAACACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTTGGAGTCCTTAAGCCATGGAATAATGGTAAGGGTGCCTAA 924 43.29 MNDLLSDSFEIPRDQPSRGGDIELGNAPTSAGDLGLDDFFKKVQEIEKKNKQLDRLLRKLQDSHEESKAVTKAPAMKAIKLRMEKDVDEVGKVARSVKTKVEDLDKENLANRQRPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKISQEYREVVERRVFTVTGTRADEKTIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHTAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGKGA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6925863 6935081 - Sed0018996.1 Sed12g1058 732014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1058 307 Pfam Syntaxin 38 241 IPR006011 GO:0016020(InterPro)
Sed12g1058 307 Gene3D - 196 299 - -
Sed12g1058 307 Coils Coil 36 70 - -
Sed12g1058 307 PANTHER SYNTAXIN 38 288 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed12g1058 307 Coils Coil 135 155 - -
Sed12g1058 307 MobiDBLite consensus disorder prediction 1 29 - -
Sed12g1058 307 CDD SNARE_syntaxin1-like 205 267 - -
Sed12g1058 307 SUPERFAMILY t-snare proteins 34 261 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed12g1058 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Sed12g1058 307 SMART tSNARE_6 201 268 IPR000727 -
Sed12g1058 307 FunFam Syntaxin 132 31 160 - -
Sed12g1058 307 Coils Coil 209 229 - -
Sed12g1058 307 FunFam Syntaxin 132 199 299 - -
Sed12g1058 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Sed12g1058 307 Pfam SNARE domain 242 294 IPR000727 -
Sed12g1058 307 Gene3D - 33 160 - -
Sed12g1058 307 CDD SynN 36 193 IPR006011 GO:0016020(InterPro)
Sed12g1058 307 SMART SynN_4 31 157 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3073 Sed-Chr5:41018533 Sed12g1058 Sed-Chr12:6925863 4.70E-80 dispersed
Sed12g1058 Sed-Chr12:6925863 Sed12g1060 Sed-Chr12:6925863 9.90E-120 dispersed
Sed12g1058 Sed-Chr12:6925863 Sed12g1059 Sed-Chr12:6925863 6.40E-119 tandem
Sed12g1058 Sed-Chr12:6925863 Sed02g0884 Sed-Chr2:46386456 1.60E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1058 K08486 - csv:101203075 500.36