Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1058 | ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGACCAACCTTCTAGAGGAGGAGACATTGAGCTTGGAAATGCTCCTACTAGTGCAGGGGATCTGGGCCTGGATGATTTCTTTAAAAAGGTCCAAGAGATTGAAAAAAAAAACAAGCAGCTAGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACCAAGGCTCCAGCAATGAAAGCAATCAAGCTGCGAATGGAAAAGGATGTTGATGAAGTTGGAAAAGTTGCACGTTCTGTGAAGACCAAAGTCGAAGACCTTGACAAAGAGAATCTGGCAAATAGGCAGAGGCCTGGGTGTGGCAAAGGATCAGGTGTAGATAGATCGAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATTTTACGTGAAAAAATCAGTCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCACTAGAGCTGACGAAAAGACCATCGAGAAATTAATTGAAACTGGGGATAGCGAGCAAATCTTTCAAAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGATACTCTAGCTGAAATTCAAGAGCGTCACACTGCAGTGAGAGAACTAGAGAGGAAGTTACTCGAACTACAGCAGGTATTTCTGGACATGGCAGTATTGGTAGATGCACAAGGAGACATGCTTGACAATATTGAATCACATGTGACAAGTGCAGTAGATCATGTGCAACAAGGGAACACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTTGGAGTCCTTAAGCCATGGAATAATGGTAAGGGTGCCTAA | 924 | 43.29 | MNDLLSDSFEIPRDQPSRGGDIELGNAPTSAGDLGLDDFFKKVQEIEKKNKQLDRLLRKLQDSHEESKAVTKAPAMKAIKLRMEKDVDEVGKVARSVKTKVEDLDKENLANRQRPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKISQEYREVVERRVFTVTGTRADEKTIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHTAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGKGA | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 6925863 | 6935081 | - | Sed0018996.1 | Sed12g1058 | 732014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1058 | 307 | Pfam | Syntaxin | 38 | 241 | IPR006011 | GO:0016020(InterPro) | |
Sed12g1058 | 307 | Gene3D | - | 196 | 299 | - | - | |
Sed12g1058 | 307 | Coils | Coil | 36 | 70 | - | - | |
Sed12g1058 | 307 | PANTHER | SYNTAXIN | 38 | 288 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Sed12g1058 | 307 | Coils | Coil | 135 | 155 | - | - | |
Sed12g1058 | 307 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Sed12g1058 | 307 | CDD | SNARE_syntaxin1-like | 205 | 267 | - | - | |
Sed12g1058 | 307 | SUPERFAMILY | t-snare proteins | 34 | 261 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Sed12g1058 | 307 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 206 | 268 | IPR000727 | - | |
Sed12g1058 | 307 | SMART | tSNARE_6 | 201 | 268 | IPR000727 | - | |
Sed12g1058 | 307 | FunFam | Syntaxin 132 | 31 | 160 | - | - | |
Sed12g1058 | 307 | Coils | Coil | 209 | 229 | - | - | |
Sed12g1058 | 307 | FunFam | Syntaxin 132 | 199 | 299 | - | - | |
Sed12g1058 | 307 | ProSitePatterns | Syntaxin / epimorphin family signature. | 212 | 251 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Sed12g1058 | 307 | Pfam | SNARE domain | 242 | 294 | IPR000727 | - | |
Sed12g1058 | 307 | Gene3D | - | 33 | 160 | - | - | |
Sed12g1058 | 307 | CDD | SynN | 36 | 193 | IPR006011 | GO:0016020(InterPro) | |
Sed12g1058 | 307 | SMART | SynN_4 | 31 | 157 | IPR006011 | GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3073 | Sed-Chr5:41018533 | Sed12g1058 | Sed-Chr12:6925863 | 4.70E-80 | dispersed | |
Sed12g1058 | Sed-Chr12:6925863 | Sed12g1060 | Sed-Chr12:6925863 | 9.90E-120 | dispersed | |
Sed12g1058 | Sed-Chr12:6925863 | Sed12g1059 | Sed-Chr12:6925863 | 6.40E-119 | tandem | |
Sed12g1058 | Sed-Chr12:6925863 | Sed02g0884 | Sed-Chr2:46386456 | 1.60E-141 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1058 | K08486 | - | csv:101203075 | 500.36 |