Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1059 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGACCAACCTTCTAGAGGAGGAGACATTGAGCTTGGAAATGCTCCTACTAGTGCAGGGGATCTGGGCCTGGATGATTTCTTTAAAAAGGTCCAAGAGATTGAAAAAAAAAACAAGCAGCTAGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACCAAGGCTCCAGCAATGAAAGCAATCAAGCTGCGAATGGAAAAGGATGTTGATGAAGTTGGAAAAGTTGCACGTTCTGTGAAGACCAAAGTCGAAGACCTTGACAAAGAGAATCTGGCAAATAGGCAGAGGCCTGGGTGTGGCAAAGGATCAGGTGTAGATAGATCGAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATTTTACGTGAAAAAATCAGTCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCACTAGAGCTGACGAAAAGACCATCGAGAAATTAATTGAAACTGGGGATAGCGAGCAAATCTTTCAAAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGATACTCTAGCTGAAATTCAAGAGCGTCACACTGCAGTGAGAGAACTAGAGAGGAAGTTACTCGAACTACAGCAGGGTCAAGCGGTTTGTCCAGTTAGAATAATCGTGGAGGCACTCACAAATATACACACACCTAAGAAAGACTGGCATAACATAACATCTACCCACCCTCAACATTGCAGGTATTTCTGGACATGGCAGTATTGGTAG 819 44.08 MNDLLSDSFEIPRDQPSRGGDIELGNAPTSAGDLGLDDFFKKVQEIEKKNKQLDRLLRKLQDSHEESKAVTKAPAMKAIKLRMEKDVDEVGKVARSVKTKVEDLDKENLANRQRPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKISQEYREVVERRVFTVTGTRADEKTIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHTAVRELERKLLELQQGQAVCPVRIIVEALTNIHTPKKDWHNITSTHPQHCRYFWTWQYW 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6925863 6935081 - Sed0018996.2 Sed12g1059 732015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1059 272 Pfam Syntaxin 38 228 IPR006011 GO:0016020(InterPro)
Sed12g1059 272 Coils Coil 36 70 - -
Sed12g1059 272 Coils Coil 135 155 - -
Sed12g1059 272 MobiDBLite consensus disorder prediction 1 29 - -
Sed12g1059 272 FunFam Syntaxin 132 31 160 - -
Sed12g1059 272 SUPERFAMILY t-snare proteins 36 228 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed12g1059 272 PANTHER SYNTAXIN 38 228 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed12g1059 272 Gene3D - 34 229 - -
Sed12g1059 272 CDD SynN 36 193 IPR006011 GO:0016020(InterPro)
Sed12g1059 272 SMART SynN_4 31 157 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1059 Sed-Chr12:6925863 Sed12g1336 Sed-Chr12:10205518 3.90E-51 dispersed
Sed12g1058 Sed-Chr12:6925863 Sed12g1059 Sed-Chr12:6925863 6.40E-119 tandem
Sed12g1059 Sed-Chr12:6925863 Sed12g1060 Sed-Chr12:6925863 4.40E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1059 K08486 - csv:101203075 364.77