Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1060 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGACCAACCTTCTAGAGGAGGAGACATTGAGCTTGGAAATGCTCCTACTAGTGCAGGGGATCTGGGCCTGGATGATTTCTTTAAAAAGGTCCAAGAGATTGAAAAAAAAAACAAGCAGCTAGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACCAAGGCTCCAGCAATGAAAGCAATCAAGCTGCGAATGGAAAAGGATGTTGATGAAGTTGGAAAAGTTGCACGTTCTGTGAAGACCAAAGTCGAAGACCTTGACAAAGAGAATCTGGCAAATAGGCAGAGGCCTGGGTGTGGCAAAGGATCAGGTGTAGATAGATCGAGAACAGCAACTACTCTTGCCTTAAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATTTTACGTGAAAAAATCAGTCAAGAGTATCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCACTAGAGCTGACGAAAAGACCATCGAGAAATTAATTGAAACTGGGGATAGCGAGCAAATCTTTCAAAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGATACTCTAGCTGAAATTCAAGAGCGTCACACTGCAGTGAGAGAACTAGAGAGGAAGTTACTCGAACTACAGCAGGTATATTAG 693 43.87 MNDLLSDSFEIPRDQPSRGGDIELGNAPTSAGDLGLDDFFKKVQEIEKKNKQLDRLLRKLQDSHEESKAVTKAPAMKAIKLRMEKDVDEVGKVARSVKTKVEDLDKENLANRQRPGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKISQEYREVVERRVFTVTGTRADEKTIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHTAVRELERKLLELQQVY 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6925863 6935081 - Sed0018996.3 Sed12g1060 732016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1060 230 Coils Coil 209 229 - -
Sed12g1060 230 SUPERFAMILY t-snare proteins 36 230 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Sed12g1060 230 Coils Coil 36 70 - -
Sed12g1060 230 Coils Coil 135 155 - -
Sed12g1060 230 MobiDBLite consensus disorder prediction 1 29 - -
Sed12g1060 230 Pfam Syntaxin 38 230 IPR006011 GO:0016020(InterPro)
Sed12g1060 230 PANTHER SYNTAXIN 38 229 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Sed12g1060 230 FunFam Syntaxin 132 31 160 - -
Sed12g1060 230 CDD SynN 36 193 IPR006011 GO:0016020(InterPro)
Sed12g1060 230 Gene3D - 34 230 - -
Sed12g1060 230 SMART SynN_4 31 157 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0886 Sed-Chr2:46386456 Sed12g1060 Sed-Chr12:6925863 7.00E-102 dispersed
Sed02g0887 Sed-Chr2:46386456 Sed12g1060 Sed-Chr12:6925863 7.00E-102 dispersed
Sed12g1058 Sed-Chr12:6925863 Sed12g1060 Sed-Chr12:6925863 9.90E-120 dispersed
Sed12g1060 Sed-Chr12:6925863 Sed12g1336 Sed-Chr12:10205518 2.50E-51 dispersed
Sed12g1059 Sed-Chr12:6925863 Sed12g1060 Sed-Chr12:6925863 4.40E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1060 K08486 - csv:101203075 368.622