Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1091 ATGTGGAAATCCGCCGTCAATATGATCGGAGAACTACGCAAGAGGACCGGTTTCCGATCAGATACAGTCAGCCTCCAGGAGAAGGAAAAGATTCGATTTGGTCAGATAATTCATAGGCTTGCAGTCCGGTTTATGAATGTATCAGCAGATTATATGGAACAGTACGAACCGTCAGATGAGGCTTGGAATGCTGGCTATTATATTCATCCAGATGAGCTTGCAGCCGTAGTTCGAAGCCATGATCATAAAGCATTGAAATTCCATGGTGGTGTTAAAGGACTTTTAAGGAAAGTTTCAGTTGCACTAAATGCCGGTGTTAGCGAAAAGGAGACGTCCGAGAGACGAAAGATTTATGGTTATAATCGTTACAAAGTGCATTCGATATCCTTTTTCGAGTTCGTCTGGAAAGCTTTACGTAACTTGAAACTAATCGTTCTAATATTCTGTGCACTAGTTTCTTTAGGCATTAGAATTGGCTCTGAAGGATGGCCAAAGGGAGCCTATGATGGCTTAGGAATTTTACTCAGTATAGTATTGGTTGTCTTGGTTACTTCTATTACTGATTACAAGCAATCTTTAGTATTCAAAGATCTTGACTGGGAGGAGAAAAACAATTATGTTGAGGTCACTAGGGAAGGGCTGAGGAAAAAAATTTCTACTTATGACTTAGTTGTTGGAGATATTGTTCATCTATCCTATGGAGATCTGGTTCCTGCTGATGGGGTTTTCGTATCTGGATACAGACTTCTTATCGATGCATTCCGCATTAAAGGTGTGAGTGAACCAATGAAGAAAGATGAGGAGAATCCGTTTCTTCTTTCGGGAACCGAAGTGCAAGAGGGATCTGGTAAGATGATGGTAACAGCAGTTGGCATGAAAACCGAACGGGGAAGGTTAATGGAAGATTATTGCGAGGAAAGGGACGATGCATCTCCGCGGCAGGTGAAACTGAATGATGTTGCGACTCGTACTGGTACACTTGGTTTGATTGTTGATGTATGTACATTCTTGGTGACTATGAGAACATTTCTCTGGGAAAAATCTGCTCACTATCCCTTGGCTAATTGGACTTCAAGTGATGCACTAATACTCTTAGATATCATTTCCATTGCACTTACCATAATGCTCATAACCGCTCCTGAAGGCTCAGCACTGGCAATGAAATTGAGCCTTGCGTTTTCTATGAAGAAACTAATGGATGAAAGAGCTTTTGTGGGGAATGCATTTGCATGTGAGACGATGGGTTCGGCTAGTTGCGTTTGCACGGATAAGACCGGGATTTTAACCACAAACCATATGATAGTTAGCCGTGCTTGGGTTTGTGAAAAATTTATGGAGAATGAAGATCATGAGAGTGTAAACAAATTGAAATCAGAGATACCTGAAGGTGTTTTAGGCATCATTTTGCAATGCATATTTCAAAATACTAGCTGCAAAGTGACGAAGGATAAAGACGGACATAACTTAATCGTCGGTGGAACGCCAACTGAATCAGCAATATTAGAGTTTGGCATGCATTTGGGGGGGGGGGGGGGGGATTATCATGCCCAATGTATAGAAGAATATGCGATACTTAAGTCTGAGCCTTTCATTTCTGTTAGGAAGAAAATGTTTGCACTTGTAGCTCTTCGTAATGGAAAGACCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATTCTAAGTTTGTGTGACAAGTTCATTGATTCCAATGGGGAATCTATTTCCTTAACACAAGATAAGGTAATTAATGTTACCAATGTTATCGATGACTTTGCCGATAAAGCTTTGACGATAATTTGCTTGGCCTTTAAAGATAGAGAGTACTATGACGATTATTTTCCAAGTTATGGATGTACATTACTTGCAGTTGTTGGAATCAAGAACCCTGTACGCCCAGGGGTCAAGGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACGGATGACAATATTAATACAGCAAAGGCCATTGCTAAAGAATGCGGTATACTTACGGACGATGGTGAAGCAATGGAAGGACTGGAGTTTTGCAATTTGTCTCAAGAGGAGATGAAGAAAGTTTTACCAAAACTCCAGGTGATCGCTCAGTCCTTGCCAGAGGACAGATACAAATTGGTTAACGGTTTGCAGAATACGTTTGGCGAGGTCGTTGCAGTCGTTGGAGATGAGATTCATGACGCTTTCCGTTTTTCGGATATTGGACTGTCTACGGGCAGGGCTGGGACAAGGTTAGCCAGAAATTATGCATGTGCCGGTGTCAACATTATGGATAGCAATTTTTCAACGGTTGTAAATGTTGCTACATGGGGACGTGCGTTGTATATTAATGCACAAAAGTTTGTGCAGTTTCAGCTAACAGTTTCCATAACTGCTTTCATAATCAATTACCTTTCTGTTTGCATCTCAGGATCGGCTTCTCTTTCGTCTGTTCACTTGCTTTGGATCAACTTGATTAAGGACACTCTTGGTGCTTTGGCACTGACCACAGAACCAGCAAGCCATGAGCTTATGCAAAAACCTCCAATTCCCAAAGGGGCGAGCTTTATTACAGAGGCCATGTGGAGAAACATTATTGGTTAA 2595 41.46 MWKSAVNMIGELRKRTGFRSDTVSLQEKEKIRFGQIIHRLAVRFMNVSADYMEQYEPSDEAWNAGYYIHPDELAAVVRSHDHKALKFHGGVKGLLRKVSVALNAGVSEKETSERRKIYGYNRYKVHSISFFEFVWKALRNLKLIVLIFCALVSLGIRIGSEGWPKGAYDGLGILLSIVLVVLVTSITDYKQSLVFKDLDWEEKNNYVEVTREGLRKKISTYDLVVGDIVHLSYGDLVPADGVFVSGYRLLIDAFRIKGVSEPMKKDEENPFLLSGTEVQEGSGKMMVTAVGMKTERGRLMEDYCEERDDASPRQVKLNDVATRTGTLGLIVDVCTFLVTMRTFLWEKSAHYPLANWTSSDALILLDIISIALTIMLITAPEGSALAMKLSLAFSMKKLMDERAFVGNAFACETMGSASCVCTDKTGILTTNHMIVSRAWVCEKFMENEDHESVNKLKSEIPEGVLGIILQCIFQNTSCKVTKDKDGHNLIVGGTPTESAILEFGMHLGGGGGDYHAQCIEEYAILKSEPFISVRKKMFALVALRNGKTRAFVKGASEIILSLCDKFIDSNGESISLTQDKVINVTNVIDDFADKALTIICLAFKDREYYDDYFPSYGCTLLAVVGIKNPVRPGVKEAVQTCLAAGITVRMVTDDNINTAKAIAKECGILTDDGEAMEGLEFCNLSQEEMKKVLPKLQVIAQSLPEDRYKLVNGLQNTFGEVVAVVGDEIHDAFRFSDIGLSTGRAGTRLARNYACAGVNIMDSNFSTVVNVATWGRALYINAQKFVQFQLTVSITAFIINYLSVCISGSASLSSVHLLWINLIKDTLGALALTTEPASHELMQKPPIPKGASFITEAMWRNIIG 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7114793 7126435 + Sed0014166.1 Sed12g1091 732047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1091 864 SUPERFAMILY HAD-like 410 770 IPR036412 -
Sed12g1091 864 Gene3D - 136 859 - -
Sed12g1091 864 SUPERFAMILY Calcium ATPase, transduction domain A 205 300 IPR008250 -
Sed12g1091 864 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 428 634 IPR023299 GO:0000166(InterPro)
Sed12g1091 864 SUPERFAMILY Calcium ATPase, transmembrane domain M 88 863 IPR023298 -
Sed12g1091 864 Gene3D - 431 629 IPR023299 GO:0000166(InterPro)
Sed12g1091 864 Pfam Cation transport ATPase (P-type) 477 565 - -
Sed12g1091 864 Pfam Cation transporting ATPase, C-terminus 812 863 IPR006068 -
Sed12g1091 864 Gene3D - 418 770 IPR023214 -
Sed12g1091 864 Pfam E1-E2 ATPase 205 399 - -
Sed12g1091 864 NCBIfam calcium-translocating P-type ATPase, PMCA-type 81 864 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed12g1091 864 PRINTS Sodium/potassium-transporting ATPase signature 171 191 - -
Sed12g1091 864 PRINTS Sodium/potassium-transporting ATPase signature 414 435 - -
Sed12g1091 864 PRINTS Sodium/potassium-transporting ATPase signature 550 568 - -
Sed12g1091 864 Gene3D - 105 304 - -
Sed12g1091 864 PANTHER CATION TRANSPORTING ATPASE 57 864 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed12g1091 864 Pfam haloacid dehalogenase-like hydrolase 610 732 - -
Sed12g1091 864 Pfam Cation transporter/ATPase, N-terminus 88 153 IPR004014 -
Sed12g1091 864 PRINTS P-type cation-transporting ATPase superfamily signature 644 654 - -
Sed12g1091 864 PRINTS P-type cation-transporting ATPase superfamily signature 421 435 - -
Sed12g1091 864 PRINTS P-type cation-transporting ATPase superfamily signature 252 266 - -
Sed12g1091 864 PRINTS P-type cation-transporting ATPase superfamily signature 622 633 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1091 Sed-Chr12:7114793 Sed12g1093 Sed-Chr12:7117288 0.00E+00 dispersed
Sed12g1091 Sed-Chr12:7114793 Sed12g1092 Sed-Chr12:7114793 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1091 K01537 - csv:101206199 1041.57