Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1092 ATGGAACAGTACGAACCGTCAGATGAGGCTTGGAATGCTGGCTATTATATTCATCCAGATGAGCTTGCAGCCGTAGTTCGAAGCCATGATCATAAAGCATTGAAATTCCATGGTGGTGTTAAAGGACTTTTAAGGAAAGTTTCAGTTGCACTAAATGCCGGTGTTAGCGAAAAGGAGACGTCCGAGAGACGAAAGATTTATGGTTATAATCGTTACAAAGTGCATTCGATATCCTTTTTCGAGTTCGTCTGGAAAGCTTTACGTAACTTGAAACTAATCGTTCTAATATTCTGTGCACTAGTTTCTTTAGGCATTAGAATTGGCTCTGAAGGATGGCCAAAGGGAGCCTATGATGGCTTAGGAATTTTACTCAGTATAGTATTGGTTGTCTTGGTTACTTCTATTACTGATTACAAGCAATCTTTAGTATTCAAAGATCTTGACTGGGAGGAGAAAAACAATTATGTTGAGGTCACTAGGGAAGGGCTGAGGAAAAAAATTTCTACTTATGACTTAGTTGTTGGAGATATTGTTCATCTATCCTATGGAGATCTGGTTCCTGCTGATGGGGTTTTCGTATCTGGATACAGACTTCTTATCGATGCATTCCGCATTAAAGGTGTGAGTGAACCAATGAAGAAAGATGAGGAGAATCCGTTTCTTCTTTCGGGAACCGAAGTGCAAGAGGGATCTGGTAAGATGATGGTAACAGCAGTTGGCATGAAAACCGAACGGGGAAGGTTAATGGAAGATTATTGCGAGGAAAGGGACGATGCATCTCCGCGGCAGGTGAAACTGAATGATGTTGCGACTCGTACTGGTACACTTGGTTTGATTGTTGATGTATGTACATTCTTGGTGACTATGAGAACATTTCTCTGGGAAAAATCTGCTCACTATCCCTTGGCTAATTGGACTTCAAGTGATGCACTAATACTCTTAGATATCATTTCCATTGCACTTACCATAATGCTCATAACCGCTCCTGAAGGCTCAGCACTGGCAATGAAATTGAGCCTTGCGTTTTCTATGAAGAAACTAATGGATGAAAGAGCTTTTGTGGGGAATGCATTTGCATGTGAGACGATGGGTTCGGCTAGTTGCGTTTGCACGGATAAGACCGGGATTTTAACCACAAACCATATGATAGTTAGCCGTGCTTGGGTTTGTGAAAAATTTATGGAGAATGAAGATCATGAGAGTGTAAACAAATTGAAATCAGAGATACCTGAAGGTGTTTTAGGCATCATTTTGCAATGCATATTTCAAAATACTAGCTGCAAAGTGACGAAGGATAAAGACGGACATAACTTAATCGTCGGTGGAACGCCAACTGAATCAGCAATATTAGAGTTTGGCATGCATTTGGGGGGGGGGGGGGGGGATTATCATGCCCAATGTATAGAAGAATATGCGATACTTAAGTCTGAGCCTTTCATTTCTGTTAGGAAGAAAATGTTTGCACTTGTAGCTCTTCGTAATGGAAAGACCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATTCTAAGTTTGTGTGACAAGTTCATTGATTCCAATGGGGAATCTATTTCCTTAACACAAGATAAGGTAATTAATGTTACCAATGTTATCGATGACTTTGCCGATAAAGCTTTGACGATAATTTGCTTGGCCTTTAAAGATAGAGAGTACTATGACGATTATTTTCCAAGTTATGGATGTACATTACTTGCAGTTGTTGGAATCAAGAACCCTGTACGCCCAGGGGTCAAGGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACGGATGACAATATTAATACAGCAAAGGCCATTGCTAAAGAATGCGGTATACTTACGGACGATGGTGAAGCAATGGAAGGACTGGAGTTTTGCAATTTGTCTCAAGAGGAGATGAAGAAAGTTTTACCAAAACTCCAGGTGATCGCTCAGTCCTTGCCAGAGGACAGATACAAATTGGTTAACGGTTTGCAGAATACGTTTGGCGAGGTCGTTGCAGTCGTTGGAGATGAGATTCATGACGCTTTCCGTTTTTCGGATATTGGACTGTCTACGGGCAGGGCTGGGACAAGGTTAGCCAGAAATTATGCATGTGCCGGTGTCAACATTATGGATAGCAATTTTTCAACGGTTGTAAATGTTGCTACATGGGGACGTGCGTTGTATATTAATGCACAAAAGTTTGTGCAGTTTCAGCTAACAGTTTCCATAACTGCTTTCATAATCAATTACCTTTCTGTTTGCATCTCAGGATCGGCTTCTCTTTCGTCTGTTCACTTGCTTTGGATCAACTTGATTAAGGACACTCTTGGTGCTTTGGCACTGACCACAGAACCAGCAAGCCATGAGCTTATGCAAAAACCTCCAATTCCCAAAGGGGCGAGCTTTATTACAGAGGCCATGTGGAGAAACATTATTGGTTAA 2442 41.28 MEQYEPSDEAWNAGYYIHPDELAAVVRSHDHKALKFHGGVKGLLRKVSVALNAGVSEKETSERRKIYGYNRYKVHSISFFEFVWKALRNLKLIVLIFCALVSLGIRIGSEGWPKGAYDGLGILLSIVLVVLVTSITDYKQSLVFKDLDWEEKNNYVEVTREGLRKKISTYDLVVGDIVHLSYGDLVPADGVFVSGYRLLIDAFRIKGVSEPMKKDEENPFLLSGTEVQEGSGKMMVTAVGMKTERGRLMEDYCEERDDASPRQVKLNDVATRTGTLGLIVDVCTFLVTMRTFLWEKSAHYPLANWTSSDALILLDIISIALTIMLITAPEGSALAMKLSLAFSMKKLMDERAFVGNAFACETMGSASCVCTDKTGILTTNHMIVSRAWVCEKFMENEDHESVNKLKSEIPEGVLGIILQCIFQNTSCKVTKDKDGHNLIVGGTPTESAILEFGMHLGGGGGDYHAQCIEEYAILKSEPFISVRKKMFALVALRNGKTRAFVKGASEIILSLCDKFIDSNGESISLTQDKVINVTNVIDDFADKALTIICLAFKDREYYDDYFPSYGCTLLAVVGIKNPVRPGVKEAVQTCLAAGITVRMVTDDNINTAKAIAKECGILTDDGEAMEGLEFCNLSQEEMKKVLPKLQVIAQSLPEDRYKLVNGLQNTFGEVVAVVGDEIHDAFRFSDIGLSTGRAGTRLARNYACAGVNIMDSNFSTVVNVATWGRALYINAQKFVQFQLTVSITAFIINYLSVCISGSASLSSVHLLWINLIKDTLGALALTTEPASHELMQKPPIPKGASFITEAMWRNIIG 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7114793 7126435 + Sed0014166.5 Sed12g1092 732048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1092 813 Pfam Cation transporting ATPase, C-terminus 761 812 IPR006068 -
Sed12g1092 813 Pfam Cation transporter/ATPase, N-terminus 37 102 IPR004014 -
Sed12g1092 813 Gene3D - 85 808 - -
Sed12g1092 813 Gene3D - 367 719 IPR023214 -
Sed12g1092 813 PRINTS Sodium/potassium-transporting ATPase signature 120 140 - -
Sed12g1092 813 PRINTS Sodium/potassium-transporting ATPase signature 499 517 - -
Sed12g1092 813 PRINTS Sodium/potassium-transporting ATPase signature 363 384 - -
Sed12g1092 813 Gene3D - 380 578 IPR023299 GO:0000166(InterPro)
Sed12g1092 813 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 377 583 IPR023299 GO:0000166(InterPro)
Sed12g1092 813 Pfam Cation transport ATPase (P-type) 426 514 - -
Sed12g1092 813 Pfam E1-E2 ATPase 154 348 - -
Sed12g1092 813 NCBIfam calcium-translocating P-type ATPase, PMCA-type 30 813 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed12g1092 813 PRINTS P-type cation-transporting ATPase superfamily signature 201 215 - -
Sed12g1092 813 PRINTS P-type cation-transporting ATPase superfamily signature 593 603 - -
Sed12g1092 813 PRINTS P-type cation-transporting ATPase superfamily signature 571 582 - -
Sed12g1092 813 PRINTS P-type cation-transporting ATPase superfamily signature 370 384 - -
Sed12g1092 813 PANTHER CATION TRANSPORTING ATPASE 20 813 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed12g1092 813 Gene3D - 54 253 - -
Sed12g1092 813 SUPERFAMILY HAD-like 359 719 IPR036412 -
Sed12g1092 813 SUPERFAMILY Calcium ATPase, transmembrane domain M 37 812 IPR023298 -
Sed12g1092 813 Pfam haloacid dehalogenase-like hydrolase 559 681 - -
Sed12g1092 813 SUPERFAMILY Calcium ATPase, transduction domain A 154 249 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1092 Sed-Chr12:7114793 Sed12g1095 Sed-Chr12:7117288 0.00E+00 dispersed
Sed12g1091 Sed-Chr12:7114793 Sed12g1092 Sed-Chr12:7114793 0.00E+00 tandem
Sed12g1092 Sed-Chr12:7114793 Sed12g1093 Sed-Chr12:7117288 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1092 K01537 - csv:101206199 1024.23