Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1093 | ATGTCACAACTGTCACTTCTTGTCACCCATAATCTTCATAAACACAAAAAAATAACAGCAAAACAACTAAAATCATATCTCAATCACCCAACAAAAATTACTAAGAAAATGTGCCAAAGTCACCCCGAAGAAAAGATTCGATTTGGTCAGATAATTCATAGGCTTGCAGTCCGGTTTATGAATGCAGATTATATGGAACAGTACGAACCGTCAGATGAGGCTTGGAATGCTGGCTATTATATTCATCCAGATGAGCTTGCAGCCGTAGTTCGAAGCCATGATCATAAAGCATTGAAATTCCATGGTGGTGTTAAAGGACTTTTAAGGAAAGTTTCAGTTGCACTAAATGCCGGTGTTAGCGAAAAGGAGACGTCCGAGAGACGAAAGATTTATGGTTATAATCGTTACAAAGTGCATTCGATATCCTTTTTCGAGTTCGTCTGGAAAGCTTTACGTAACTTGAAACTAATCGTTCTAATATTCTGTGCACTAGTTTCTTTAGGCATTAGAATTGGCTCTGAAGGATGGCCAAAGGGAGCCTATGATGGCTTAGGAATTTTACTCAGTATAGTATTGGTTGTCTTGGTTACTTCTATTACTGATTACAAGCAATCTTTAGTATTCAAAGATCTTGACTGGGAGGAGAAAAACAATTATGTTGAGGTCACTAGGGAAGGGCTGAGGAAAAAAATTTCTACTTATGACTTAGTTGTTGGAGATATTGTTCATCTATCCTATGGAGATCTGGTTCCTGCTGATGGGGTTTTCGTATCTGGATACAGACTTCTTATCGATGCATTCCGCATTAAAGGTGTGAGTGAACCAATGAAGAAAGATGAGGAGAATCCGTTTCTTCTTTCGGGAACCGAAGTGCAAGAGGGATCTGGTAAGATGATGGTAACAGCAGTTGGCATGAAAACCGAACGGGGAAGGTTAATGGAAGATTATTGCGAGGAAAGGGACGATGCATCTCCGCGGCAGGTGAAACTGAATGATGTTGCGACTCGTACTGGTACACTTGGTTTGATTGTTGATGTATGTACATTCTTGGTGACTATGAGAACATTTCTCTGGGAAAAATCTGCTCACTATCCCTTGGCTAATTGGACTTCAAGTGATGCACTAATACTCTTAGATATCATTTCCATTGCACTTACCATAATGCTCATAACCGCTCCTGAAGGCTCAGCACTGGCAATGAAATTGAGCCTTGCGTTTTCTATGAAGAAACTAATGGATGAAAGAGCTTTTGTGGGGAATGCATTTGCATGTGAGACGATGGGTTCGGCTAGTTGCGTTTGCACGGATAAGACCGGGATTTTAACCACAAACCATATGATAGTTAGCCGTGCTTGGGTTTGTGAAAAATTTATGGAGAATGAAGATCATGAGAGTGTAAACAAATTGAAATCAGAGATACCTGAAGGTGTTTTAGGCATCATTTTGCAATGCATATTTCAAAATACTAGCTGCAAAGTGACGAAGGATAAAGACGGACATAACTTAATCGTCGGTGGAACGCCAACTGAATCAGCAATATTAGAGTTTGGCATGCATTTGGGGGGGGGGGGGGGGGATTATCATGCCCAATGTATAGAAGAATATGCGATACTTAAGTCTGAGCCTTTCATTTCTGTTAGGAAGAAAATGTTTGCACTTGTAGCTCTTCGTAATGGAAAGACCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATTCTAAGTTTGTGTGACAAGTTCATTGATTCCAATGGGGAATCTATTTCCTTAACACAAGATAAGGTAATTAATGTTACCAATGTTATCGATGACTTTGCCGATAAAGCTTTGACGATAATTTGCTTGGCCTTTAAAGATAGAGAGTACTATGACGATTATTTTCCAAGTTATGGATGTACATTACTTGCAGTTGTTGGAATCAAGAACCCTGTACGCCCAGGGGTCAAGGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACGGATGACAATATTAATACAGCAAAGGCCATTGCTAAAGAATGCGGTATACTTACGGACGATGGTGAAGCAATGGAAGGACTGGAGTTTTGCAATTTGTCTCAAGAGGAGATGAAGAAAGTTTTACCAAAACTCCAGGTGATCGCTCAGTCCTTGCCAGAGGACAGATACAAATTGGTTAACGGTTTGCAGAATACGTTTGGCGAGGTCGTTGCAGTCGTTGGAGATGAGATTCATGACGCTTTCCGTTTTTCGGATATTGGACTGTCTACGGGCAGGGCTGGGACAAGGTTAGCCAGAAATTATGCATGTGCCGGTGTCAACATTATGGATAGCAATTTTTCAACGGTTGTAAATGTTGCTACATGGGGACGTGCGTTGTATATTAATGCACAAAAGTTTGTGCAGTTTCAGCTAACAGTTTCCATAACTGCTTTCATAATCAATTACCTTTCTGTTTGCATCTCAGGTGTTGTAACGGCCCAGCTTTCCATCCCGGTTAATAACAAAATTAATTGGAAAATTAATTGA | 2523 | 40.35 | MSQLSLLVTHNLHKHKKITAKQLKSYLNHPTKITKKMCQSHPEEKIRFGQIIHRLAVRFMNADYMEQYEPSDEAWNAGYYIHPDELAAVVRSHDHKALKFHGGVKGLLRKVSVALNAGVSEKETSERRKIYGYNRYKVHSISFFEFVWKALRNLKLIVLIFCALVSLGIRIGSEGWPKGAYDGLGILLSIVLVVLVTSITDYKQSLVFKDLDWEEKNNYVEVTREGLRKKISTYDLVVGDIVHLSYGDLVPADGVFVSGYRLLIDAFRIKGVSEPMKKDEENPFLLSGTEVQEGSGKMMVTAVGMKTERGRLMEDYCEERDDASPRQVKLNDVATRTGTLGLIVDVCTFLVTMRTFLWEKSAHYPLANWTSSDALILLDIISIALTIMLITAPEGSALAMKLSLAFSMKKLMDERAFVGNAFACETMGSASCVCTDKTGILTTNHMIVSRAWVCEKFMENEDHESVNKLKSEIPEGVLGIILQCIFQNTSCKVTKDKDGHNLIVGGTPTESAILEFGMHLGGGGGDYHAQCIEEYAILKSEPFISVRKKMFALVALRNGKTRAFVKGASEIILSLCDKFIDSNGESISLTQDKVINVTNVIDDFADKALTIICLAFKDREYYDDYFPSYGCTLLAVVGIKNPVRPGVKEAVQTCLAAGITVRMVTDDNINTAKAIAKECGILTDDGEAMEGLEFCNLSQEEMKKVLPKLQVIAQSLPEDRYKLVNGLQNTFGEVVAVVGDEIHDAFRFSDIGLSTGRAGTRLARNYACAGVNIMDSNFSTVVNVATWGRALYINAQKFVQFQLTVSITAFIINYLSVCISGVVTAQLSIPVNNKINWKIN | 840 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7117288 | 7121944 | + | Sed0014166.2 | Sed12g1093 | 732049 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1093 | 840 | PANTHER | CATION TRANSPORTING ATPASE | 66 | 823 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
Sed12g1093 | 840 | Pfam | E1-E2 ATPase | 218 | 412 | - | - | |
Sed12g1093 | 840 | SUPERFAMILY | Calcium ATPase, transduction domain A | 218 | 313 | IPR008250 | - | |
Sed12g1093 | 840 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 441 | 647 | IPR023299 | GO:0000166(InterPro) | |
Sed12g1093 | 840 | Gene3D | - | 118 | 317 | - | - | |
Sed12g1093 | 840 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 93 | 821 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
Sed12g1093 | 840 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 101 | 821 | IPR023298 | - | |
Sed12g1093 | 840 | PRINTS | P-type cation-transporting ATPase superfamily signature | 265 | 279 | - | - | |
Sed12g1093 | 840 | PRINTS | P-type cation-transporting ATPase superfamily signature | 434 | 448 | - | - | |
Sed12g1093 | 840 | PRINTS | P-type cation-transporting ATPase superfamily signature | 635 | 646 | - | - | |
Sed12g1093 | 840 | PRINTS | P-type cation-transporting ATPase superfamily signature | 657 | 667 | - | - | |
Sed12g1093 | 840 | Gene3D | - | 431 | 783 | IPR023214 | - | |
Sed12g1093 | 840 | Pfam | haloacid dehalogenase-like hydrolase | 623 | 745 | - | - | |
Sed12g1093 | 840 | SUPERFAMILY | HAD-like | 423 | 783 | IPR036412 | - | |
Sed12g1093 | 840 | Gene3D | - | 149 | 819 | - | - | |
Sed12g1093 | 840 | Pfam | Cation transporter/ATPase, N-terminus | 101 | 166 | IPR004014 | - | |
Sed12g1093 | 840 | Gene3D | - | 444 | 642 | IPR023299 | GO:0000166(InterPro) | |
Sed12g1093 | 840 | Pfam | Cation transport ATPase (P-type) | 490 | 578 | - | - | |
Sed12g1093 | 840 | PRINTS | Sodium/potassium-transporting ATPase signature | 563 | 581 | - | - | |
Sed12g1093 | 840 | PRINTS | Sodium/potassium-transporting ATPase signature | 184 | 204 | - | - | |
Sed12g1093 | 840 | PRINTS | Sodium/potassium-transporting ATPase signature | 427 | 448 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g1091 | Sed-Chr12:7114793 | Sed12g1093 | Sed-Chr12:7117288 | 0.00E+00 | dispersed | |
Sed12g1093 | Sed-Chr12:7117288 | Sed12g1095 | Sed-Chr12:7117288 | 0.00E+00 | dispersed | |
Sed12g1092 | Sed-Chr12:7114793 | Sed12g1093 | Sed-Chr12:7117288 | 0.00E+00 | tandem | |
Sed12g1093 | Sed-Chr12:7117288 | Sed12g1094 | Sed-Chr12:7117288 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1093 | K01537 | - | csv:101206199 | 956.436 |