Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1093 ATGTCACAACTGTCACTTCTTGTCACCCATAATCTTCATAAACACAAAAAAATAACAGCAAAACAACTAAAATCATATCTCAATCACCCAACAAAAATTACTAAGAAAATGTGCCAAAGTCACCCCGAAGAAAAGATTCGATTTGGTCAGATAATTCATAGGCTTGCAGTCCGGTTTATGAATGCAGATTATATGGAACAGTACGAACCGTCAGATGAGGCTTGGAATGCTGGCTATTATATTCATCCAGATGAGCTTGCAGCCGTAGTTCGAAGCCATGATCATAAAGCATTGAAATTCCATGGTGGTGTTAAAGGACTTTTAAGGAAAGTTTCAGTTGCACTAAATGCCGGTGTTAGCGAAAAGGAGACGTCCGAGAGACGAAAGATTTATGGTTATAATCGTTACAAAGTGCATTCGATATCCTTTTTCGAGTTCGTCTGGAAAGCTTTACGTAACTTGAAACTAATCGTTCTAATATTCTGTGCACTAGTTTCTTTAGGCATTAGAATTGGCTCTGAAGGATGGCCAAAGGGAGCCTATGATGGCTTAGGAATTTTACTCAGTATAGTATTGGTTGTCTTGGTTACTTCTATTACTGATTACAAGCAATCTTTAGTATTCAAAGATCTTGACTGGGAGGAGAAAAACAATTATGTTGAGGTCACTAGGGAAGGGCTGAGGAAAAAAATTTCTACTTATGACTTAGTTGTTGGAGATATTGTTCATCTATCCTATGGAGATCTGGTTCCTGCTGATGGGGTTTTCGTATCTGGATACAGACTTCTTATCGATGCATTCCGCATTAAAGGTGTGAGTGAACCAATGAAGAAAGATGAGGAGAATCCGTTTCTTCTTTCGGGAACCGAAGTGCAAGAGGGATCTGGTAAGATGATGGTAACAGCAGTTGGCATGAAAACCGAACGGGGAAGGTTAATGGAAGATTATTGCGAGGAAAGGGACGATGCATCTCCGCGGCAGGTGAAACTGAATGATGTTGCGACTCGTACTGGTACACTTGGTTTGATTGTTGATGTATGTACATTCTTGGTGACTATGAGAACATTTCTCTGGGAAAAATCTGCTCACTATCCCTTGGCTAATTGGACTTCAAGTGATGCACTAATACTCTTAGATATCATTTCCATTGCACTTACCATAATGCTCATAACCGCTCCTGAAGGCTCAGCACTGGCAATGAAATTGAGCCTTGCGTTTTCTATGAAGAAACTAATGGATGAAAGAGCTTTTGTGGGGAATGCATTTGCATGTGAGACGATGGGTTCGGCTAGTTGCGTTTGCACGGATAAGACCGGGATTTTAACCACAAACCATATGATAGTTAGCCGTGCTTGGGTTTGTGAAAAATTTATGGAGAATGAAGATCATGAGAGTGTAAACAAATTGAAATCAGAGATACCTGAAGGTGTTTTAGGCATCATTTTGCAATGCATATTTCAAAATACTAGCTGCAAAGTGACGAAGGATAAAGACGGACATAACTTAATCGTCGGTGGAACGCCAACTGAATCAGCAATATTAGAGTTTGGCATGCATTTGGGGGGGGGGGGGGGGGATTATCATGCCCAATGTATAGAAGAATATGCGATACTTAAGTCTGAGCCTTTCATTTCTGTTAGGAAGAAAATGTTTGCACTTGTAGCTCTTCGTAATGGAAAGACCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATTCTAAGTTTGTGTGACAAGTTCATTGATTCCAATGGGGAATCTATTTCCTTAACACAAGATAAGGTAATTAATGTTACCAATGTTATCGATGACTTTGCCGATAAAGCTTTGACGATAATTTGCTTGGCCTTTAAAGATAGAGAGTACTATGACGATTATTTTCCAAGTTATGGATGTACATTACTTGCAGTTGTTGGAATCAAGAACCCTGTACGCCCAGGGGTCAAGGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACGGATGACAATATTAATACAGCAAAGGCCATTGCTAAAGAATGCGGTATACTTACGGACGATGGTGAAGCAATGGAAGGACTGGAGTTTTGCAATTTGTCTCAAGAGGAGATGAAGAAAGTTTTACCAAAACTCCAGGTGATCGCTCAGTCCTTGCCAGAGGACAGATACAAATTGGTTAACGGTTTGCAGAATACGTTTGGCGAGGTCGTTGCAGTCGTTGGAGATGAGATTCATGACGCTTTCCGTTTTTCGGATATTGGACTGTCTACGGGCAGGGCTGGGACAAGGTTAGCCAGAAATTATGCATGTGCCGGTGTCAACATTATGGATAGCAATTTTTCAACGGTTGTAAATGTTGCTACATGGGGACGTGCGTTGTATATTAATGCACAAAAGTTTGTGCAGTTTCAGCTAACAGTTTCCATAACTGCTTTCATAATCAATTACCTTTCTGTTTGCATCTCAGGTGTTGTAACGGCCCAGCTTTCCATCCCGGTTAATAACAAAATTAATTGGAAAATTAATTGA 2523 40.35 MSQLSLLVTHNLHKHKKITAKQLKSYLNHPTKITKKMCQSHPEEKIRFGQIIHRLAVRFMNADYMEQYEPSDEAWNAGYYIHPDELAAVVRSHDHKALKFHGGVKGLLRKVSVALNAGVSEKETSERRKIYGYNRYKVHSISFFEFVWKALRNLKLIVLIFCALVSLGIRIGSEGWPKGAYDGLGILLSIVLVVLVTSITDYKQSLVFKDLDWEEKNNYVEVTREGLRKKISTYDLVVGDIVHLSYGDLVPADGVFVSGYRLLIDAFRIKGVSEPMKKDEENPFLLSGTEVQEGSGKMMVTAVGMKTERGRLMEDYCEERDDASPRQVKLNDVATRTGTLGLIVDVCTFLVTMRTFLWEKSAHYPLANWTSSDALILLDIISIALTIMLITAPEGSALAMKLSLAFSMKKLMDERAFVGNAFACETMGSASCVCTDKTGILTTNHMIVSRAWVCEKFMENEDHESVNKLKSEIPEGVLGIILQCIFQNTSCKVTKDKDGHNLIVGGTPTESAILEFGMHLGGGGGDYHAQCIEEYAILKSEPFISVRKKMFALVALRNGKTRAFVKGASEIILSLCDKFIDSNGESISLTQDKVINVTNVIDDFADKALTIICLAFKDREYYDDYFPSYGCTLLAVVGIKNPVRPGVKEAVQTCLAAGITVRMVTDDNINTAKAIAKECGILTDDGEAMEGLEFCNLSQEEMKKVLPKLQVIAQSLPEDRYKLVNGLQNTFGEVVAVVGDEIHDAFRFSDIGLSTGRAGTRLARNYACAGVNIMDSNFSTVVNVATWGRALYINAQKFVQFQLTVSITAFIINYLSVCISGVVTAQLSIPVNNKINWKIN 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7117288 7121944 + Sed0014166.2 Sed12g1093 732049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1093 840 PANTHER CATION TRANSPORTING ATPASE 66 823 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed12g1093 840 Pfam E1-E2 ATPase 218 412 - -
Sed12g1093 840 SUPERFAMILY Calcium ATPase, transduction domain A 218 313 IPR008250 -
Sed12g1093 840 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 441 647 IPR023299 GO:0000166(InterPro)
Sed12g1093 840 Gene3D - 118 317 - -
Sed12g1093 840 NCBIfam calcium-translocating P-type ATPase, PMCA-type 93 821 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed12g1093 840 SUPERFAMILY Calcium ATPase, transmembrane domain M 101 821 IPR023298 -
Sed12g1093 840 PRINTS P-type cation-transporting ATPase superfamily signature 265 279 - -
Sed12g1093 840 PRINTS P-type cation-transporting ATPase superfamily signature 434 448 - -
Sed12g1093 840 PRINTS P-type cation-transporting ATPase superfamily signature 635 646 - -
Sed12g1093 840 PRINTS P-type cation-transporting ATPase superfamily signature 657 667 - -
Sed12g1093 840 Gene3D - 431 783 IPR023214 -
Sed12g1093 840 Pfam haloacid dehalogenase-like hydrolase 623 745 - -
Sed12g1093 840 SUPERFAMILY HAD-like 423 783 IPR036412 -
Sed12g1093 840 Gene3D - 149 819 - -
Sed12g1093 840 Pfam Cation transporter/ATPase, N-terminus 101 166 IPR004014 -
Sed12g1093 840 Gene3D - 444 642 IPR023299 GO:0000166(InterPro)
Sed12g1093 840 Pfam Cation transport ATPase (P-type) 490 578 - -
Sed12g1093 840 PRINTS Sodium/potassium-transporting ATPase signature 563 581 - -
Sed12g1093 840 PRINTS Sodium/potassium-transporting ATPase signature 184 204 - -
Sed12g1093 840 PRINTS Sodium/potassium-transporting ATPase signature 427 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1091 Sed-Chr12:7114793 Sed12g1093 Sed-Chr12:7117288 0.00E+00 dispersed
Sed12g1093 Sed-Chr12:7117288 Sed12g1095 Sed-Chr12:7117288 0.00E+00 dispersed
Sed12g1092 Sed-Chr12:7114793 Sed12g1093 Sed-Chr12:7117288 0.00E+00 tandem
Sed12g1093 Sed-Chr12:7117288 Sed12g1094 Sed-Chr12:7117288 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1093 K01537 - csv:101206199 956.436