Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1094 ATGTCACAACTGTCACTTCTTGTCACCCATAATCTTCATAAACACAAAAAAATAACAGCAAAACAACTAAAATCATATCTCAATCACCCAACAAAAATTACTAAGAAAATGTGCCAAAGTCACCCCGAAGAAAAGATTCGATTTGGTCAGATAATTCATAGGCTTGCAGTCCGGTTTATGAATGCAGATTATATGGAACAGTACGAACCGTCAGATGAGGCTTGGAATGCTGGCTATTATATTCATCCAGATGAGCTTGCAGCCGTAGTTCGAAGCCATGATCATAAAGCATTGAAATTCCATGGTGGTGTTAAAGGACTTTTAAGGAAAGTTTCAGTTGCACTAAATGCCGGTGTTAGCGAAAAGGAGACGTCCGAGAGACGAAAGATTTATGGTTATAATCGTTACAAAGTGCATTCGATATCCTTTTTCGAGTTCGTCTGGAAAGCTTTACGTAACTTGAAACTAATCGTTCTAATATTCTGTGCACTAGTTTCTTTAGGCATTAGAATTGGCTCTGAAGGATGGCCAAAGGGAGCCTATGATGGCTTAGGAATTTTACTCAGTATAGTATTGGTTGTCTTGGTTACTTCTATTACTGATTACAAGCAATCTTTAGTATTCAAAGATCTTGACTGGGAGGAGAAAAACAATTATGTTGAGGTCACTAGGGAAGGGCTGAGGAAAAAAATTTCTACTTATGACTTAGTTGTTGGAGATATTGTTCATCTATCCTATGGAGATCTGGTTCCTGCTGATGGGGTTTTCGTATCTGGATACAGACTTCTTATCGATGCATTCCGCATTAAAGGTGTGAGTGAACCAATGAAGAAAGATGAGGAGAATCCGTTTCTTCTTTCGGGAACCGAAGTGCAAGAGGGATCTGGTAAGATGATGGTAACAGCAGTTGGCATGAAAACCGAACGGGGAAGGTTAATGGAAGATTATTGCGAGGAAAGGGACGATGCATCTCCGCGGCAGGTGAAACTGAATGATGTTGCGACTCGTACTGGTACACTTGGTTTGATTGTTGATGTATGTACATTCTTGGTGACTATGAGAACATTTCTCTGGGAAAAATCTGCTCACTATCCCTTGGCTAATTGGACTTCAAGTGATGCACTAATACTCTTAGATATCATTTCCATTGCACTTACCATAATGCTCATAACCGCTCCTGAAGGCTCAGCACTGGCAATGAAATTGAGCCTTGCGTTTTCTATGAAGAAACTAATGGATGAAAGAGCTTTTGTGGGGAATGCATTTGCATGTGAGACGATGGGTTCGGCTAGTTGCGTTTGCACGGATAAGACCGGGATTTTAACCACAAACCATATGATAGTTAGCCGTGCTTGGGTTTGTGAAAAATTTATGGAGAATGAAGATCATGAGAGTGTAAACAAATTGAAATCAGAGATACCTGAAGGTGTTTTAGGCATCATTTTGCAATGCATATTTCAAAATACTAGCTGCAAAGTGACGAAGGATAAAGACGGACATAACTTAATCGTCGGTGGAACGCCAACTGAATCAGCAATATTAGAGTTTGGCATGCATTTGGGGGGGGGGGGGGGGGATTATCATGCCCAATGTATAGAAGAATATGCGATACTTAAGTCTGAGCCTTTCATTTCTGTTAGGAAGAAAATGTTTGCACTTGTAGCTCTTCGTAATGGAAAGACCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATTCTAAGTTTGTGTGACAAGTTCATTGATTCCAATGGGGAATCTATTTCCTTAACACAAGATAAGGTAATTAATGTTACCAATGTTATCGATGACTTTGCCGATAAAGCTTTGACGATAATTTGCTTGGCCTTTAAAGATAGAGAGTACTATGACGATTATTTTCCAAGTTATGGATGTACATTACTTGCAGTTGTTGGAATCAAGAACCCTGTACGCCCAGGGGTCAAGGAAGCTGTTCAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACGGATGACAATATTAATACAGCAAAGGCCATTGCTAAAGAATGCGGTATACTTACGGACGATGGTGAAGCAATGGAAGGACTGGAGTTTTGCAATTTGTCTCAAGAGGAGATGAAGAAAGTTTTACCAAAACTCCAGGTTCACTCTTTCAATCTTGGAATTAATTAG 2160 39.86 MSQLSLLVTHNLHKHKKITAKQLKSYLNHPTKITKKMCQSHPEEKIRFGQIIHRLAVRFMNADYMEQYEPSDEAWNAGYYIHPDELAAVVRSHDHKALKFHGGVKGLLRKVSVALNAGVSEKETSERRKIYGYNRYKVHSISFFEFVWKALRNLKLIVLIFCALVSLGIRIGSEGWPKGAYDGLGILLSIVLVVLVTSITDYKQSLVFKDLDWEEKNNYVEVTREGLRKKISTYDLVVGDIVHLSYGDLVPADGVFVSGYRLLIDAFRIKGVSEPMKKDEENPFLLSGTEVQEGSGKMMVTAVGMKTERGRLMEDYCEERDDASPRQVKLNDVATRTGTLGLIVDVCTFLVTMRTFLWEKSAHYPLANWTSSDALILLDIISIALTIMLITAPEGSALAMKLSLAFSMKKLMDERAFVGNAFACETMGSASCVCTDKTGILTTNHMIVSRAWVCEKFMENEDHESVNKLKSEIPEGVLGIILQCIFQNTSCKVTKDKDGHNLIVGGTPTESAILEFGMHLGGGGGDYHAQCIEEYAILKSEPFISVRKKMFALVALRNGKTRAFVKGASEIILSLCDKFIDSNGESISLTQDKVINVTNVIDDFADKALTIICLAFKDREYYDDYFPSYGCTLLAVVGIKNPVRPGVKEAVQTCLAAGITVRMVTDDNINTAKAIAKECGILTDDGEAMEGLEFCNLSQEEMKKVLPKLQVHSFNLGIN 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7117288 7121944 + Sed0014166.3 Sed12g1094 732050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1094 719 Gene3D - 118 317 - -
Sed12g1094 719 SUPERFAMILY HAD-like 630 716 IPR036412 -
Sed12g1094 719 SUPERFAMILY Calcium ATPase, transduction domain A 218 313 IPR008250 -
Sed12g1094 719 PRINTS P-type cation-transporting ATPase superfamily signature 657 667 - -
Sed12g1094 719 PRINTS P-type cation-transporting ATPase superfamily signature 265 279 - -
Sed12g1094 719 PRINTS P-type cation-transporting ATPase superfamily signature 434 448 - -
Sed12g1094 719 PRINTS P-type cation-transporting ATPase superfamily signature 635 646 - -
Sed12g1094 719 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 441 647 IPR023299 GO:0000166(InterPro)
Sed12g1094 719 Gene3D - 149 430 - -
Sed12g1094 719 Pfam Cation transport ATPase (P-type) 490 578 - -
Sed12g1094 719 Gene3D - 431 711 IPR023214 -
Sed12g1094 719 Pfam haloacid dehalogenase-like hydrolase 623 681 - -
Sed12g1094 719 Pfam E1-E2 ATPase 218 412 - -
Sed12g1094 719 PRINTS Sodium/potassium-transporting ATPase signature 427 448 - -
Sed12g1094 719 PRINTS Sodium/potassium-transporting ATPase signature 184 204 - -
Sed12g1094 719 PRINTS Sodium/potassium-transporting ATPase signature 563 581 - -
Sed12g1094 719 PANTHER CATION TRANSPORTING ATPASE 66 711 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Sed12g1094 719 Pfam Cation transporter/ATPase, N-terminus 101 166 IPR004014 -
Sed12g1094 719 NCBIfam calcium-translocating P-type ATPase, PMCA-type 93 711 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Sed12g1094 719 Gene3D - 444 642 IPR023299 GO:0000166(InterPro)
Sed12g1094 719 SUPERFAMILY Calcium ATPase, transmembrane domain M 101 428 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1094 Sed-Chr12:7117288 Sed12g1100 Sed-Chr12:7159031 5.30E-257 dispersed
Sed12g1093 Sed-Chr12:7117288 Sed12g1094 Sed-Chr12:7117288 0.00E+00 tandem
Sed12g1094 Sed-Chr12:7117288 Sed12g1095 Sed-Chr12:7117288 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1094 K01537 - csv:101206199 838.565