Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g1100 | ATGCCATTGGAGCGGTATTTGAAGGATTTCGAAGTTCAGCCCAAACATTCTTCAGAGGAAGCCTTGAGGAAGTGGAGATCTGCCGTTTCCGTCGTCAGAAATCCACGCCGGAGGTTCCGAAATGTTGCAGATCTCGTCAAACGAGCCGAGGCCGAGAAGAAGAAGCTCAAGATCCAGGAAAAAATTCGAGTTGCTCTCTATGTTCAGAAGGCAGCATTGCATTTTATGGATGCCATAGATAGGGAAGAGTATCATCTGTCAGATGAGGCTAGGAGTGCTGGCTATAGTATTCATCCAGATGAGCTTGCCGCCATAGTTCGTAGCCATGATCATAAAGCATTGAAATTCCATGGTGGAGTTGAAGGACTTTCGAGGAAAGTTTCTGTCCCACTAGATGCAGGTGTTAGCGAAAAGGATACATCGAAGAGACAAGAGATTTATGGTTATAATCGTTACACAGAGAAACCTTCCAGATCATTTTTGGAGTTTGTATGGGATGCATTACATGACGTGACATTAATCATCCTAATATTTTGTGCACTAATATCTTTGGGCGTTGGGATAGCAACAGAAGGATGGCCAAAGGGTACATATGATGGTTTAGGCATTCTACTCAGTATACTATTGGTCGTCTTGGTTACTTCTATCAGTGATTACAGGCAATCTTTGCAATTCAGGGATCTTGATAGGAAGAAGAAAAAAATTGATGTCCATGTCACTAGAGATGGGTTGAGGAAAAAAGTTTCGATTTATGACTTGGTTGTTGGAGATGTTGTTCATCTATCCATTGGAGATCAGGTTCCTGCTGATGGGGTTTTCATATCAGGATACAGTCTTCTTATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAAATGAGGAGAAACCATTTCTCCTTTCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGCATGAGAACAGAATGGGGAAAGTTGATGGAAGCCCTAAGTGAGGGAGGAGATGATGAGACTCCACTGCAGGTGAAACTGAATGGTGTAGCAACTCTCATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCTTGGAAAAAGCTGCTCACCATCAATTTACAAAGTGGACTTCAAGTGATGCACTAAAACTCTTGGATTTCTTTGCCATTGCAGTTACCATAATAGTGGTTGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTGAGCCTTGCCTTTGCTATGAAGAAATTGATGGAGGAAAGAGCACTAGTTAGGCATCTATCTGCATGTGAAACAATGGGTTCAGCTACTTGCATTTGCACAGATAAGACAGGCACATTAACCACAAACCATATGATAGTTAGCCGTGCATGGATCTGCGAAAAACATATGGAGAGCAAAGACAATGAGAGTGTTAACAAATTGAAATCAGAGATCTCTGAAGATGTTTTTGGGGTACTTTTGCAGAGCATATTTCAAAACACTAGCTGCGAAGTGACTAAAGATAAAGACGGGAAAAACTCGATCGTCGGTGGAACACCAACCGAATCAGCAATATTAGAGTTCGGCATGCATTTGGGTGGGGATTATCACGCCCAACATAAGGAATATAAGATACTCAAGGTTGAGCCTTTCAATTCCGTTAAGAAGAAAATGTCTGTACTTGTAGCTCTTCCTAGTGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTTAGTATATGTGACAAGTTTATTGATTCCAATGGAGAATGTATGGACTTAACAGAAGAAAAGGTAAAGAATGCTACAAATGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACACTTTGCTTGGCCTTCAAAGACATAGATTCTGGTGATGAATCTATTCCAGATTCTGGATATACATTAATAGCAGTTGTTGGAATCAAGGATCCTGTACGACCAGGGGTTAAGGAAGCTGTTAAAACTTGCTTAGCAGCTGGAATAACTGTGCGTATGGTCACTGGTGACAATATTAATACAGCAAAGGCTATTGCTAAAGAATGTGGTATACTTACAGCCAATGGTTTAGCTATAGAAGGACCAAACTTCCGTAATTTATCTCCAGAGCAGATGAAGGAAATTATACCAAAAATCCAGGTGATGGCTCGGTCCTTGCCACTGGACAAATACACGTTTGTTAACAATTTGCGAAGTATGTTTGGCGAGGTCGTTGCGGTGACTGGAGATGGGACCAATGATGCTCCAGCTTTGCACGAGTCCGACATTGGGCTAGCCATGGGCATTGCCGGGACCGAGGTTGCCAAAGAAAATGCGGATGTCATCATAATGGACGACAATTTTTCGACTATTGTAAATGTTGCGAGATGGGGACGCGCTTCATATATCAACATTCAAAAGTTTGTACAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGACCAATTTCGTTTCTGCTTGTCTCTCAGGATCTGCTCCTCTTACAGCAGTTCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTTGGTGCCTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCCCCAATTCCCAAGGGGGTTAGCTTTATTACCAAAGCCATGTGGAGGAATATTATTGGTCAGAGTGTCTATCAACTTACTGTTCTTGCAGTTCTTAATTTTGGAGGAAAGCAACTTCTTGGACTTGATTCCACAAAAACACTCAACACTTTGATATTCAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATCAACAGCCGAGAGATCGAAAAGATCAACATTTTCAGGGGGATGTTTGGCGGCTGGGTATTTTTGGGAGTGATGGTATCCACAGTGGCGTTCCAAATAATAATTGTAGAACTTTTGGGTGCATTTGCAAGCACTGTGCCACTAAGCTGGGAACTGTGGGGACTGAGCGTGTTGATTGGGTTCGTGAGCATGCCCGTTGCAGTTGTGTTGAAGTCCATCCCGGTTCGTAAAGATGAACCATACACAGCCCATCACGATGGCTACGAACCACTCTCTTCTGGCCCAGAACTGGCTTGA | 3099 | 42.56 | MPLERYLKDFEVQPKHSSEEALRKWRSAVSVVRNPRRRFRNVADLVKRAEAEKKKLKIQEKIRVALYVQKAALHFMDAIDREEYHLSDEARSAGYSIHPDELAAIVRSHDHKALKFHGGVEGLSRKVSVPLDAGVSEKDTSKRQEIYGYNRYTEKPSRSFLEFVWDALHDVTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYRQSLQFRDLDRKKKKIDVHVTRDGLRKKVSIYDLVVGDVVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNINEEKPFLLSGTKVQDGSGKMMVTTVGMRTEWGKLMEALSEGGDDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLLEKAAHHQFTKWTSSDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMEERALVRHLSACETMGSATCICTDKTGTLTTNHMIVSRAWICEKHMESKDNESVNKLKSEISEDVFGVLLQSIFQNTSCEVTKDKDGKNSIVGGTPTESAILEFGMHLGGDYHAQHKEYKILKVEPFNSVKKKMSVLVALPSGGVRAFVKGASEIILSICDKFIDSNGECMDLTEEKVKNATNVINSFANEALRTLCLAFKDIDSGDESIPDSGYTLIAVVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTANGLAIEGPNFRNLSPEQMKEIIPKIQVMARSLPLDKYTFVNNLRSMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRASYINIQKFVQFQLTVNIVALVTNFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVSFITKAMWRNIIGQSVYQLTVLAVLNFGGKQLLGLDSTKTLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFGGWVFLGVMVSTVAFQIIIVELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKSIPVRKDEPYTAHHDGYEPLSSGPELA | 1032 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 7159031 | 7175435 | - | Sed0013893.1 | Sed12g1100 | 732056 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g1100 | 1032 | NCBIfam | HAD-IC family P-type ATPase | 715 | 838 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g1100 | 1032 | NCBIfam | HAD-IC family P-type ATPase | 549 | 695 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g1100 | 1032 | NCBIfam | HAD-IC family P-type ATPase | 203 | 485 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g1100 | 1032 | SFLD | Haloacid Dehalogenase | 433 | 803 | - | - | |
| Sed12g1100 | 1032 | SUPERFAMILY | Calcium ATPase, transduction domain A | 237 | 331 | IPR008250 | - | |
| Sed12g1100 | 1032 | Coils | Coil | 39 | 59 | - | - | |
| Sed12g1100 | 1032 | SFLD | p-type atpase | 433 | 803 | IPR044492 | - | |
| Sed12g1100 | 1032 | CDD | P-type_ATPase_Ca_PMCA-like | 141 | 884 | - | - | |
| Sed12g1100 | 1032 | PANTHER | CATION TRANSPORTING ATPASE | 82 | 1009 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Sed12g1100 | 1032 | Gene3D | - | 17 | 78 | - | - | |
| Sed12g1100 | 1032 | FunFam | Calcium-transporting ATPase | 461 | 655 | - | - | |
| Sed12g1100 | 1032 | Gene3D | - | 166 | 1005 | - | - | |
| Sed12g1100 | 1032 | SMART | Cation_ATPase_N_a_2 | 93 | 188 | IPR004014 | - | |
| Sed12g1100 | 1032 | Pfam | Cation transport ATPase (P-type) | 507 | 591 | - | - | |
| Sed12g1100 | 1032 | Gene3D | - | 134 | 334 | - | - | |
| Sed12g1100 | 1032 | PRINTS | H+-transporting ATPase (proton pump) signature | 783 | 808 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g1100 | 1032 | PRINTS | H+-transporting ATPase (proton pump) signature | 610 | 628 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g1100 | 1032 | PRINTS | H+-transporting ATPase (proton pump) signature | 751 | 767 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g1100 | 1032 | FunFam | Calcium-transporting ATPase | 648 | 796 | - | - | |
| Sed12g1100 | 1032 | FunFam | Calcium-transporting ATPase | 213 | 334 | - | - | |
| Sed12g1100 | 1032 | Gene3D | - | 448 | 796 | IPR023214 | - | |
| Sed12g1100 | 1032 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 8 | 50 | IPR024750 | GO:0005516(InterPro) | |
| Sed12g1100 | 1032 | Pfam | Cation transporter/ATPase, N-terminus | 117 | 183 | IPR004014 | - | |
| Sed12g1100 | 1032 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 117 | 1010 | IPR023298 | - | |
| Sed12g1100 | 1032 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 453 | 459 | IPR018303 | - | |
| Sed12g1100 | 1032 | Gene3D | - | 461 | 655 | IPR023299 | GO:0000166(InterPro) | |
| Sed12g1100 | 1032 | Coils | Coil | 600 | 620 | - | - | |
| Sed12g1100 | 1032 | PRINTS | P-type cation-transporting ATPase superfamily signature | 751 | 770 | - | - | |
| Sed12g1100 | 1032 | PRINTS | P-type cation-transporting ATPase superfamily signature | 451 | 465 | - | - | |
| Sed12g1100 | 1032 | PRINTS | P-type cation-transporting ATPase superfamily signature | 775 | 787 | - | - | |
| Sed12g1100 | 1032 | PRINTS | P-type cation-transporting ATPase superfamily signature | 670 | 680 | - | - | |
| Sed12g1100 | 1032 | PRINTS | P-type cation-transporting ATPase superfamily signature | 282 | 296 | - | - | |
| Sed12g1100 | 1032 | PRINTS | P-type cation-transporting ATPase superfamily signature | 648 | 659 | - | - | |
| Sed12g1100 | 1032 | SUPERFAMILY | HAD-like | 450 | 856 | IPR036412 | - | |
| Sed12g1100 | 1032 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
| Sed12g1100 | 1032 | Pfam | E1-E2 ATPase | 234 | 430 | - | - | |
| Sed12g1100 | 1032 | Pfam | Cation transporting ATPase, C-terminus | 836 | 1006 | IPR006068 | - | |
| Sed12g1100 | 1032 | FunFam | Calcium-transporting ATPase | 768 | 1011 | - | - | |
| Sed12g1100 | 1032 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 457 | 660 | IPR023299 | GO:0000166(InterPro) | |
| Sed12g1100 | 1032 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 109 | 1010 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0937 | Sed-Chr3:5798969 | Sed12g1100 | Sed-Chr12:7159031 | 0.00E+00 | dispersed | |
| Sed08g1624 | Sed-Chr8:31373094 | Sed12g1100 | Sed-Chr12:7159031 | 3.40E-233 | dispersed | |
| Sed11g0591 | Sed-Chr11:6913248 | Sed12g1100 | Sed-Chr12:7159031 | 5.70E-255 | dispersed | |
| Sed12g1094 | Sed-Chr12:7117288 | Sed12g1100 | Sed-Chr12:7159031 | 5.30E-257 | dispersed | |
| Sed12g1095 | Sed-Chr12:7117288 | Sed12g1100 | Sed-Chr12:7159031 | 1.40E-271 | dispersed | |
| Sed12g1100 | Sed-Chr12:7159031 | Sed14g0918 | Sed-Chr14:18280057 | 0.00E+00 | dispersed | |
| Sed12g1100 | Sed-Chr12:7159031 | Sed12g1101 | Sed-Chr12:7160757 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g1100 | K01537 | - | csv:101206199 | 1757.27 |