Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1105 | ATGGCTTCGCCGTCGTTTGATCCCGGCTTCAAACGCGAAGTCGGCCCCTGTACCGGCGCTGCTGCGGTTGGAGGAGGCGGAGCGGCGGAGAACTCGGAGGTTGTAATGGCGAACGATCAGGTTTTGGTGTACAGAGGGTTGAAGAGAGCGAAGAAAGAGAGAGGCTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCGTGTGCTGCCGGAAAAAGAAGCTCTATCTATCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTGTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGGGCATATGATGAAGAGGAGGCAGCTGCTAGGGCATACGATTTGGCAGCATTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAAAATGTTACCAGAGAGGACTATCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCTAAATATCGTGGTCTCTCAAGTCGATGGGACCCTTCATTTGGTCGTATGCCAGGCCCTGATTACGCCAACAGCATAAATTATGGTGCTGGAGCAGATCAAGCAACAGAAAGCGAATGTGCACACAGCTTCTGCATTGATAGGAAGATTGATTTAACAAGACACATTAAGTGGTGGGGGCCCAGCAAAACTCGAACGGTCAGTGCTGGCTCGAAGTCGTCAGAAGAAGACAAACATAGCTGTGCTGGAGAAGTTGGTAGTGAACTCAAAGCTCTTGAACAGGCAGCCCGTCCCACAGAGCCATATGAGATGCCTTGTTTGGGTACAAGTACATTGCATGGGGTTAAGAAGGTTGCTTCCAAGGTGTCTGCTTTAAGCATTTTGTCGCGGTCAGCAGCCTACAAGAGTTGGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAATGAAAATGATGAGAACAAAAATAAAAACATTGTTATCAAGATAGATCGCGGCAAAGCAATCGAAACACACACAAGTCATGATGGTGATCCGAGCCAGAAACATGGGGTTGCTTTCGGAACAAGTGGATTGCCTCTCCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACATTGTTGATCCCTTGGGAGATCCGATTCATTGGGCGTCTCTTGTTTCTGTTCTTCCTACCGAACTTTCTGGTACAGCCGAGGTTACAAACACTGAAACCTCCTCAACTTACACTTTGTTTCAGCCTGAGGAATAA | 1305 | 46.9 | MASPSFDPGFKREVGPCTGAAAVGGGGAAENSEVVMANDQVLVYRGLKRAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVTREDYLASLRRKSSGFSRGISKYRGLSSRWDPSFGRMPGPDYANSINYGAGADQATESECAHSFCIDRKIDLTRHIKWWGPSKTRTVSAGSKSSEEDKHSCAGEVGSELKALEQAARPTEPYEMPCLGTSTLHGVKKVASKVSALSILSRSAAYKSWQEKALKLQEINNENDENKNKNIVIKIDRGKAIETHTSHDGDPSQKHGVAFGTSGLPLQRNMFPLTPFLTAPLLSSYNIVDPLGDPIHWASLVSVLPTELSGTAEVTNTETSSTYTLFQPEE | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7215771 | 7220123 | - | Sed0019964.1 | Sed12g1105 | 732061 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1105 | 434 | ProSiteProfiles | AP2/ERF domain profile. | 76 | 142 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1105 | 434 | FunFam | AP2-like ethylene-responsive transcription factor | 75 | 144 | - | - | |
Sed12g1105 | 434 | Pfam | AP2 domain | 77 | 134 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1105 | 434 | SUPERFAMILY | DNA-binding domain | 75 | 143 | IPR016177 | GO:0003677(InterPro) | |
Sed12g1105 | 434 | Gene3D | AP2/ERF domain | 76 | 144 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1105 | 434 | PRINTS | Ethylene responsive element binding protein signature | 77 | 88 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1105 | 434 | PRINTS | Ethylene responsive element binding protein signature | 124 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1105 | 434 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 60 | 263 | - | - | |
Sed12g1105 | 434 | SMART | rav1_2 | 76 | 148 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g1105 | Sed-Chr12:7215771 | Sed12g2212 | Sed-Chr12:32535371 | 2.70E-46 | dispersed | |
Sed12g1105 | Sed-Chr12:7215771 | Sed02g0843 | Sed-Chr2:46049876 | 5.00E-210 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40178 | PF00847 | AP2 | 3.50E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1105 | K09285 | - | csv:101206434 | 699.508 |