Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1105 ATGGCTTCGCCGTCGTTTGATCCCGGCTTCAAACGCGAAGTCGGCCCCTGTACCGGCGCTGCTGCGGTTGGAGGAGGCGGAGCGGCGGAGAACTCGGAGGTTGTAATGGCGAACGATCAGGTTTTGGTGTACAGAGGGTTGAAGAGAGCGAAGAAAGAGAGAGGCTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCGTGTGCTGCCGGAAAAAGAAGCTCTATCTATCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTGTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGGGCATATGATGAAGAGGAGGCAGCTGCTAGGGCATACGATTTGGCAGCATTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAAAATGTTACCAGAGAGGACTATCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCTAAATATCGTGGTCTCTCAAGTCGATGGGACCCTTCATTTGGTCGTATGCCAGGCCCTGATTACGCCAACAGCATAAATTATGGTGCTGGAGCAGATCAAGCAACAGAAAGCGAATGTGCACACAGCTTCTGCATTGATAGGAAGATTGATTTAACAAGACACATTAAGTGGTGGGGGCCCAGCAAAACTCGAACGGTCAGTGCTGGCTCGAAGTCGTCAGAAGAAGACAAACATAGCTGTGCTGGAGAAGTTGGTAGTGAACTCAAAGCTCTTGAACAGGCAGCCCGTCCCACAGAGCCATATGAGATGCCTTGTTTGGGTACAAGTACATTGCATGGGGTTAAGAAGGTTGCTTCCAAGGTGTCTGCTTTAAGCATTTTGTCGCGGTCAGCAGCCTACAAGAGTTGGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAATGAAAATGATGAGAACAAAAATAAAAACATTGTTATCAAGATAGATCGCGGCAAAGCAATCGAAACACACACAAGTCATGATGGTGATCCGAGCCAGAAACATGGGGTTGCTTTCGGAACAAGTGGATTGCCTCTCCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACATTGTTGATCCCTTGGGAGATCCGATTCATTGGGCGTCTCTTGTTTCTGTTCTTCCTACCGAACTTTCTGGTACAGCCGAGGTTACAAACACTGAAACCTCCTCAACTTACACTTTGTTTCAGCCTGAGGAATAA 1305 46.9 MASPSFDPGFKREVGPCTGAAAVGGGGAAENSEVVMANDQVLVYRGLKRAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVTREDYLASLRRKSSGFSRGISKYRGLSSRWDPSFGRMPGPDYANSINYGAGADQATESECAHSFCIDRKIDLTRHIKWWGPSKTRTVSAGSKSSEEDKHSCAGEVGSELKALEQAARPTEPYEMPCLGTSTLHGVKKVASKVSALSILSRSAAYKSWQEKALKLQEINNENDENKNKNIVIKIDRGKAIETHTSHDGDPSQKHGVAFGTSGLPLQRNMFPLTPFLTAPLLSSYNIVDPLGDPIHWASLVSVLPTELSGTAEVTNTETSSTYTLFQPEE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7215771 7220123 - Sed0019964.1 Sed12g1105 732061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1105 434 ProSiteProfiles AP2/ERF domain profile. 76 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1105 434 FunFam AP2-like ethylene-responsive transcription factor 75 144 - -
Sed12g1105 434 Pfam AP2 domain 77 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1105 434 SUPERFAMILY DNA-binding domain 75 143 IPR016177 GO:0003677(InterPro)
Sed12g1105 434 Gene3D AP2/ERF domain 76 144 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1105 434 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1105 434 PRINTS Ethylene responsive element binding protein signature 124 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1105 434 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 60 263 - -
Sed12g1105 434 SMART rav1_2 76 148 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1105 Sed-Chr12:7215771 Sed12g2212 Sed-Chr12:32535371 2.70E-46 dispersed
Sed12g1105 Sed-Chr12:7215771 Sed02g0843 Sed-Chr2:46049876 5.00E-210 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40178 PF00847 AP2 3.50E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1105 K09285 - csv:101206434 699.508