Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1115 ATGTTGGCAAACCCTAGCGGCCTCCATTTCCGGCCATGCTATTCTCACCCATCCCCGATTTCTCATTCTGGCGCATCCCCAATTTCTCTATCTTCCTATTGCCCTCGCTTTCATGGTTACAGGAAACCCCATTTGTCTTCTCTGACACTTCCTCGCAGCAAGAGCAATGGAAAGAGAGTGGTTGTTAGGGCTCTTTCGGACCCGGCGGCGGGGTCTTTGAGGCCTTTCTCTGTCAAAATTCCCGTTGGGGATAGATATATTTTGGTTGAGACTGGCCATATGGGGAGACAAGCTAGTAGTGCTGTTACAGTAACTGATGGAGAAACTATTGTTTATACATCTGTTTGTTTGGCTGATACAACGAGTGAGCCTTCAGATTTCTTTCCTCTTTATGTTAATTATCAAGAACGTTTTTCTGCAGCAGGTCGGACTAGTGGAGGGTTCTTCAAAAGAGAGGGAAAAGCTAGAGATCATGAGGTTCTCATTTGTAGATTGATTGATAGGCCCCTGCGTCCAACTATGCTCAAAGGTTTTTACCATGAAACCCAGATATTATCTTGGGTTTTGAGTTATGATGGTTTGCACACTCCTGATTGTTTGGCAATTACAGCAGCTGGAATAGCAGTTGCTCTCTCAGAAGTTCCCAACTCTAAAGCAGTTGCTGGAGTTCGAATTGGTCTTGTTGGCGACAAGTTTATTGTTAATCCAACCACTAAACAAATGGAAGACTCTAAACTTGATTTAGTACTAGCTGGCACAGATAGTGCAATATTGATGATAGAGGGTTATTGTAATTTTCTACCAGAAGAGGTGTTGCTCCAAGCTGTAGAAGTTGGGCAGAATGCCGTGACTGCAATTTGCAAAGAGGTGGATGCTTTAGTGAGAGAGCGTGGGAAACCGAAGATGCTTGATGCAATTAAGCTTCCTCCTCCTCAGCTATATAAACATGTTGAAGAAATTGCTGGAAGTGAGTTAGAAAAAGTCCTGCAAATTAGAAACAAAATTCCACGACGGAAGGCTCTCTCATCATTAGAAGACAAAGTTATCACTATATTGACAGAAGAAGGGTATGTCAGTTTAGATACCACTTCTTCAGGAGGTCTAGAACCCATAACTGATTTGGTGGAGGATGAAGACGAGGATGATGAAGTGGTGGTGGATGGCGAAGTCGATGAAGGTGATGTCCATATTAAACCAACTTCACGCAAGCCTATTCCAACACTCTTTTCTGAGGTTGACGTAAAGATAGTATTTAAAGAAGTGACATCCAAGTTTCTCCGGAGACGCATTGTGGAGGGTGGACGAAGAAGTGATGGGAGGACACCTGTTGAGATACGTCCAATTGACTCAAGATGTGGGCTACTTCCTCGGGCACATGGCAGCACGCTTTTCACCCGTGGTGAAACTCAGGCACTAGCTGTGGTTACGCTTGGGGATAAGCAAATGGCACAAAGAGTGGACAACCTTGTTGATGTAGATGACTTGAAGAGGTTTTACCTTCAGTACTCATTTCCCCCATCAAGCGTTGGAGAAGTCGGGCGTATCGGAGCACCTACTCGAAGGGAAATTGGTCATGGTACGCTTGCAGAGAGATCACTTGAACCATCTTTACCTTCTGAAGAGGATTTTCCTTACACTATACGTGTTGAGAGCACAATCACTGAAAGCAATGGCTCCTCGAGCATGGCATCCGTTTGTGGGGGTTCATTAGCTTTGCAGGATGCTGGAGTTCCAATTAAATGTCCAATTGCTGGTATAGCGATGGGGTTGGTTCTTGATACAAAGGAGTTCGGGGGAGATGGAACTCCGCTTATTCTGTCTGACATAACAGGATCCGAGGATGCTTCTGGAGATATGGATTTTAAGGTTGCTGGTAACGAAATGGGCATAACAGCATTTCAGATGGACATAAAGGTAGGAGGCATTACTATTCCCATTATGAGAGAGGCGCTCTTGCAAGCGAAGGATGGCCGTAAGCACATTCTTGCTGAAATGTTGAATTCTTCTCCTCCTCCTTTGAAAAGGCTATCACAGTTTGCCCCATTGATTCATATCATGAAGGTCCAACCTGAAAAAATAAATCTGATCATTGGTCCCGGTGGAAAAAAGGTGAAGAGCATTATAGAAGAAACAGGAGTTGAAGCTATTGACACTCAAGATGATGGAATAGTTAAAATTACTGCAAAGGATTTGTCAAGCTTGGAAAAATCTAAAGCTATTATTAGCAATCTGACCATGGTTCCAACTATTGGTGATATCTATAGGAACTGTGAGATCAAAACAATTGCTGCTTATGGTGTTTTTGTTGAGATAGCACCCGGACGAGAGGGACTTTGCCATATTAGTGAGTTGAGCTCAGATTGGTTGGCAAAGGCAGAAGATGCTTTTAAAGTTGGAGACAAAATTGATGTCAAACTCATTGAGGTAAATGAAAAGGGTCAGCTCCGCCTCAGCCGCCGTAAATTGCTTCCAGACGCTGATCAGGATTCCAGTTCAAAGGACAATACAGTTAACTCCTCCAGAAATAAGACCACATCTAAGAAAGTTGGTAAGGAAAACATGGAACAGACTAATGTGCAGAAAGGTGTTGCTTCACCAATTGATAGTTCATTGGAGAATCCTGCAAAACTGCAAAGGAAATTTGTACGGAAAGAAGTAACGGCGACCAAAGACAGGCCTTTAAGCGAAGAGAAGACGAAAAGCACAAGCAGTTGA 2715 43.57 MLANPSGLHFRPCYSHPSPISHSGASPISLSSYCPRFHGYRKPHLSSLTLPRSKSNGKRVVVRALSDPAAGSLRPFSVKIPVGDRYILVETGHMGRQASSAVTVTDGETIVYTSVCLADTTSEPSDFFPLYVNYQERFSAAGRTSGGFFKREGKARDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHTPDCLAITAAGIAVALSEVPNSKAVAGVRIGLVGDKFIVNPTTKQMEDSKLDLVLAGTDSAILMIEGYCNFLPEEVLLQAVEVGQNAVTAICKEVDALVRERGKPKMLDAIKLPPPQLYKHVEEIAGSELEKVLQIRNKIPRRKALSSLEDKVITILTEEGYVSLDTTSSGGLEPITDLVEDEDEDDEVVVDGEVDEGDVHIKPTSRKPIPTLFSEVDVKIVFKEVTSKFLRRRIVEGGRRSDGRTPVEIRPIDSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRVDNLVDVDDLKRFYLQYSFPPSSVGEVGRIGAPTRREIGHGTLAERSLEPSLPSEEDFPYTIRVESTITESNGSSSMASVCGGSLALQDAGVPIKCPIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEMGITAFQMDIKVGGITIPIMREALLQAKDGRKHILAEMLNSSPPPLKRLSQFAPLIHIMKVQPEKINLIIGPGGKKVKSIIEETGVEAIDTQDDGIVKITAKDLSSLEKSKAIISNLTMVPTIGDIYRNCEIKTIAAYGVFVEIAPGREGLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRKLLPDADQDSSSKDNTVNSSRNKTTSKKVGKENMEQTNVQKGVASPIDSSLENPAKLQRKFVRKEVTATKDRPLSEEKTKSTSS 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7286688 7311594 - Sed0008218.1 Sed12g1115 732071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1115 904 Gene3D - 751 822 IPR012340 -
Sed12g1115 904 MobiDBLite consensus disorder prediction 877 904 - -
Sed12g1115 904 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 68 875 IPR012162 GO:0000175(PANTHER)|GO:0000958(PANTHER)|GO:0000965(PANTHER)|GO:0003723(InterPro)|GO:0004654(InterPro)|GO:0004654(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006401(PANTHER)|GO:0006402(InterPro)|GO:0009570(PANTHER)
Sed12g1115 904 FunFam Polyribonucleotide nucleotidyltransferase 1, chloroplastic 751 822 - -
Sed12g1115 904 Pfam 3' exoribonuclease family, domain 1 85 215 IPR001247 -
Sed12g1115 904 Pfam 3' exoribonuclease family, domain 1 444 578 IPR001247 -
Sed12g1115 904 ProSiteProfiles S1 domain profile. 751 820 IPR003029 GO:0003676(InterPro)
Sed12g1115 904 FunFam Polyribonucleotide nucleotidyltransferase 678 747 - -
Sed12g1115 904 MobiDBLite consensus disorder prediction 820 904 - -
Sed12g1115 904 Gene3D - 67 300 IPR027408 -
Sed12g1115 904 Gene3D K Homology domain, type 1 679 750 IPR036612 GO:0003723(InterPro)
Sed12g1115 904 Pfam 3' exoribonuclease family, domain 2 219 281 IPR015847 -
Sed12g1115 904 Pfam S1 RNA binding domain 758 820 IPR003029 GO:0003676(InterPro)
Sed12g1115 904 NCBIfam polyribonucleotide nucleotidyltransferase 410 821 IPR012162 GO:0003723(InterPro)|GO:0004654(InterPro)|GO:0006402(InterPro)
Sed12g1115 904 Pfam KH domain 685 741 IPR004088 GO:0003723(InterPro)
Sed12g1115 904 Gene3D - 389 678 IPR027408 -
Sed12g1115 904 FunFam Polyribonucleotide nucleotidyltransferase 74 304 - -
Sed12g1115 904 MobiDBLite consensus disorder prediction 829 844 - -
Sed12g1115 904 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 684 768 IPR036612 GO:0003723(InterPro)
Sed12g1115 904 SMART S1_6 749 820 IPR003029 GO:0003676(InterPro)
Sed12g1115 904 CDD RNase_PH_PNPase_2 444 672 - -
Sed12g1115 904 SUPERFAMILY Ribonuclease PH domain 2-like 218 302 IPR036345 -
Sed12g1115 904 SUPERFAMILY Ribonuclease PH domain 2-like 572 669 IPR036345 -
Sed12g1115 904 ProSiteProfiles Type-1 KH domain profile. 681 741 - -
Sed12g1115 904 FunFam Polyribonucleotide nucleotidyltransferase 381 677 - -
Sed12g1115 904 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 74 823 IPR012162 GO:0003723(InterPro)|GO:0004654(InterPro)|GO:0006402(InterPro)
Sed12g1115 904 CDD KH-I_PNPase 679 748 - -
Sed12g1115 904 SMART kh_6 680 745 IPR004087 GO:0003676(InterPro)
Sed12g1115 904 CDD S1_PNPase 751 819 - -
Sed12g1115 904 SUPERFAMILY Ribosomal protein S5 domain 2-like 418 590 IPR020568 -
Sed12g1115 904 MobiDBLite consensus disorder prediction 851 867 - -
Sed12g1115 904 SUPERFAMILY Nucleic acid-binding proteins 756 826 IPR012340 -
Sed12g1115 904 SUPERFAMILY Ribosomal protein S5 domain 2-like 78 215 IPR020568 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1115 K00962 - - csv:101205015 1542.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0527 Sed-Chr6:4609369 Sed12g1115 Sed-Chr12:7286688 4.30E-116 dispersed
Sed06g0528 Sed-Chr6:4609369 Sed12g1115 Sed-Chr12:7286688 7.40E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g295 . . . . Bpe02g01180 . . . . Cmo12g00208 . . . Car12g00239 Sed12g1115 Cpe07g00218 . Bhi04g00842 Tan02g2563 Cmetu04g1511 . Hepe10g0359 . . . . . . . . . . . Cone17ag1121 . . . . Cme03g01739 . . Bda01g00935 . . . . . . . . . Cma12g00255 . . . . . . . . . . . Cla08g01225 Cam08g1684 Cec08g1263 Cco08g1383 Clacu08g1382 . Cre08g1167 Lsi08g01088 . Chy03g01246 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005461 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 0 1 6 1 38