Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1116 ATGGGTTTCTTAGTTTATCTCTCCAAACAAAAGGGGTTTGTTATTTTCTTGAATCTATCGTTTCTATCAGTGGTTTGTGCTTTTTTGGTGATTGGATTTTACACTCCAGAATCCCGTTTCTTTGTTTTTAATAAGAGCTTGAGGAAAATCCATGGCACTGTTCAGGAAGATTGTCAGATATTTCTTGGTCTAACTGACTTTGAAGCTAAGTGTTCTGTTCTTAAATCCAATAACCCTTGTAACACTCAAGGATATATAGATTATCTTTACTTTTTCTATTGTTTGTATGGAAATCTTAGCATCCTGGGCTACACTCTGTTGTTTTTGTGGCTTCTAGTGTTGTTTTATCTTCTTGGTAACACTGCTTCTGTATACTTTTGCTCTTCCCTTGAGAGTTTGTCCAAATTGTTGAATCTGTCCCCAACTATTGCTGGTGTTACTCTGCTTTCTCTTAGCAATGGGGCACCTGATGTTTTTGCTAGCCTTGTTGCTTTCATGGGGGATGGAACTAGGGATATTGGCTTGAATACTGTTCTTGGTGGAGCCTCTTTCGTGACATGCATCGTCGTCGGAATCATAAGTATTTTGCTGCGTCGGCGACGGGTTAAGGTGAATGGGCCTGCCTTCATTAGAGATGTTTTGTTCTTACTCTTGGTTCTTTTGTCTGTTTTCTTGATATTGCTTCATGGTCATATCAATCTGTGGGGTTCCATTGGCTTTTCTTCCATGTATATTGTTTATGTTTTGGTTGTTTATATCTCTCATGCTCAATGGTTGAGTTTTAGAAGTGATATTTGCCAAACCCTTTTGAGTGAGCCACCAAAGGATGAGGTCGAGGGTCAAGGTGAATCAAGAGATGATGAAGATGACGAGGACGAGGATGATGATGTTAGAATCGATGTATATGATCTCTGTTTTTGTCCAAGATTATCACCTTCTTGTATTGTTCTCCTTCGCATTTTGGAGATTCCTCTTTACTTGCCTAGAAGATTGACAATTCCAGCCATTGCTGAAGAAAACTGGTCTAGACCATATGCAGTTGCTTCGGTGACATTAGCTCCCCTTCTCTTATCCCTTCTATGGGCATTTCATCATCAGAGCGATACGTCTCAGTCGAACCTGATCGTCTGCATCATTGCTTTGATGCTCGGAGTTAGTTTTGGAATTGTTGCATTTGCAACAACTGAGAATGCAAGCCCACCAAAGAAGTGGCTTTTCCCTTGGCTTGCAGCTGGCTTCACCATGAGTTTAACATGGAGTTATATTGTAGCTCAGGAACTGGTAGGCCTATTGGTTTCACTCGGCTACATAATGGGCATCAGCCCTTCAATCCTAGGACTTACCTTCCTGGCTTGGGGAAACTCTCTAGGGGATTTGGTTTCTAATGTGACCATGGCCGTGAATGGCGGGCAGCGAGGGGCTCAAATCGCCATCTCTGGCTGCTATGCTGGCCCCATCTTCAATACTCTGTTCGGCCTCGGTGTGTCTCTCGTTTGCGCTGCGTGGAAGAAGTATCCTCAGCCGGTCGCCATCCCCCCAGACCCGTATGTCATGGAAACGTTGGGGTTGTTGGTAGGAGGGTTGCTTTGGGCACTTGTGGCTTTGCCAAGGAGAGAGATGAGGCTTGATGCAGTCTTGGGAGGAGGCCTTTTGGCTATCTACTTGACCTCTTTGCTCCTAAGGCTGTTGCAAGCTTTTGGGTCTTCCCATTAG 1713 43.78 MGFLVYLSKQKGFVIFLNLSFLSVVCAFLVIGFYTPESRFFVFNKSLRKIHGTVQEDCQIFLGLTDFEAKCSVLKSNNPCNTQGYIDYLYFFYCLYGNLSILGYTLLFLWLLVLFYLLGNTASVYFCSSLESLSKLLNLSPTIAGVTLLSLSNGAPDVFASLVAFMGDGTRDIGLNTVLGGASFVTCIVVGIISILLRRRRVKVNGPAFIRDVLFLLLVLLSVFLILLHGHINLWGSIGFSSMYIVYVLVVYISHAQWLSFRSDICQTLLSEPPKDEVEGQGESRDDEDDEDEDDDVRIDVYDLCFCPRLSPSCIVLLRILEIPLYLPRRLTIPAIAEENWSRPYAVASVTLAPLLLSLLWAFHHQSDTSQSNLIVCIIALMLGVSFGIVAFATTENASPPKKWLFPWLAAGFTMSLTWSYIVAQELVGLLVSLGYIMGISPSILGLTFLAWGNSLGDLVSNVTMAVNGGQRGAQIAISGCYAGPIFNTLFGLGVSLVCAAWKKYPQPVAIPPDPYVMETLGLLVGGLLWALVALPRREMRLDAVLGGGLLAIYLTSLLLRLLQAFGSSH 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7313375 7316402 - Sed0010688.1 Sed12g1116 732072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1116 570 Gene3D - 346 562 IPR044880 -
Sed12g1116 570 Gene3D - 139 268 IPR044880 -
Sed12g1116 570 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 56 568 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
Sed12g1116 570 MobiDBLite consensus disorder prediction 273 294 - -
Sed12g1116 570 Pfam Sodium/calcium exchanger protein 108 252 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1116 570 Pfam Sodium/calcium exchanger protein 409 562 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0486 Sed-Chr4:3557061 Sed12g1116 Sed-Chr12:7313375 5.20E-47 dispersed
Sed08g0927 Sed-Chr8:7837903 Sed12g1116 Sed-Chr12:7313375 2.70E-111 dispersed
Sed12g1116 Sed-Chr12:7313375 Sed12g1701 Sed-Chr12:28230899 2.30E-106 dispersed
Sed12g1116 Sed-Chr12:7313375 Sed02g0838 Sed-Chr2:46008064 2.20E-269 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1116 K13754 - csv:101204766 896.73