Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1134 ATGGCATCCCATTTCATCTTCCCCCAAACCCTAAGATCTCTCGAACAAGACTCCGACGACAATCGCCTCTGCGTTCAGAACCTCACTGAAATCGCATCTCTTCGCCAATCTCAGCTCGAAGAGTTCGTCAAAGGCGTTTCCTTTGATCTTTCCGATAAGGAGCTGTTCTGCGTCGAAGAGCAGGATACGTTCGATCGTGTCTACTCCTTGATTCGGGAGTATCATTGTCTATCTTCTACCTGTAAGCTGAATATTGTCGAGAGTCTTCGCTCTAATTTCAGTGTTCTACTTCCGAATATCGATTCGCTTGCTCGTGCTTCGCTTAGTAACGATGGCGATGCTCCGGTTCTTGAACAGATCGCGTCGCATCGTAATGCTTTTAAGATTTATACGTTTTTTCTCTTCAATATCGTCGTCAGTGAGGAATCCAGTGGTGGTAGTAGCAACAATGCCAAGGTGACTGCTAGTACTCGGAAAAAAATGCCTAGAAGTTCATGGAATTGGGAACTGCAGAGGGGGCGGATTTTGAACTTGATTGCTAATTCACTGGAGATCAATATCTCGTTCCTTTTTGGTTCATCAGACCCAGATGAGAACTATCTGTCTTTTATTACAAAAAACACTTTCTCCATGTTCGAGAATCCAATCCTTTTGAAGGATGTTGATACGAAGGATGCTTTGTGTCGGATAATTGGTGCTTGTTCTACAAAATATCATTTTACGACGCATTCGTGTGCCTCTATTATGCACCTTATTCATAAGTATGATTATGTTGTGACACACTTGGCTGATGCTGTTTCTGGGGCGGAGAAGAAATATTCTGATGGAATTTTGGCGATCTCTCTCATTAGAGATGTTGGAAGGACTAATCCGAAGGATTATGTTAAAGACACAGTTGGGGCTGAAAACATAGGCCGTTTCCTAGTCGAGCTCGCTGACAGGCTCCCGAAGTTGTGTTCAACCAACATTGGACTTCTGATACCACACTTTGGTGGTGAATCCTATAAAATAAGGAATGCGCTTGTGGGGGTTCTTGGTAAGTTGACTGCAAAAGCATTTTGCGACATTGAAGGTGAACAGAGTTGTAAGTCAGTTCGTCTACGAAGTAAGCAGGCAATGTTAGAAATATTGCTTGAACGATGTCGGGATGTTTCAGCTTACACAAGGAGTCGAGTTCTTCAGGTTTGGGCTGAACTATGTGAAGAACATTCTGTTTCTATCGGTTTGTGGAATGAAGTGGCAGCAGTTGCTGCTGGAAGGTTGGAGGATAAGAGTGCCATTGTCCGAAAATCTGCACTGCAGTTGCTCATCACTATGTTGCAGCATAACCCATTTGGTCCACAGCTGCGAATGGTTTCATTTGAAGCGACTTTAGAGCAGTATAAGAAGAAATTAGGCGAGCTTGAACCAGAAAAGTCCTCAGAAAATGTGGAAAGCGGCTCGCCATTTGATGGCGATATCTTTAGTGGTGATGGTGAAGTTGATAATGGCCTTACTGAAGGTAGGGCAGGGAACCAGGAGGATAGTTTGACTGATAGCTATCCTCCTAATATGGAAGAGGAGGCTGTTGAGAAGGATAATCTAACTTTGGATGTCGGAAACATGGAGCAGATCAGGGCTTTGGTTGCATCTCTGGAAGCTGGGCTGAGGTTTTCGACATGTATATCAGAAGTAATGCCAATACTAGTTCAGTTAATGGCTTCTTCTTCCGCCACTGACGTTGAAAATACAATTCTTTTGTTGATGAGGTGCAGACAATTCCAAATTGATGGCTCAGAGGCTTGTCTACGTAAGATGTTGCCACTGGCGTTTTCTCAAGATAAATCCATATATGAAGCTGTCGAGAATGCCTTTATAACAATATATATAACAAAAAACCCAATGGAAAGTGCTAAAAATCTCATACAACTTGCCATTGATTCAAACATTGGAGATCTAGCAGCTCTGGAGTTTATGATTGATGCCTTGGTGTCAAAAGGTGATATATCTAGTAGCACGATATCAGCTTTGTGGGATTTCTTTTGCTTTAATGTTGGAGGAACTACAGCAGAGCAAAGCCGAGGTGCATTATCTGTTCTTTGCATGGCAACAAAATCATCCGCTGGTATTGTTGGCTCCCATATACAGGACATTATTGACATCGGGTTTGGTCGATGGTCTAAGGTGGACCCTTTGCTTGCCAGGACCGCCTGCACTGCCATCGAAAGACTGTCTGAAGATGACAAGAAAAAGTTATTGGCTAGCAATGGCAGCCGGGTGTTTGATAAGCTGGACAGCTTGATTACTAGTTCCTGGCTTCCAGAGAAGATATGGTATGCTGCTGCTGATAAAGCCATAGCAGCTATATATTCAATTCATCCCTCTCCTGAAAACATAGCAGCAAATTTGGTTAAAACATCTCTTACTTCTGTTTTTAACGGTAATAAGGAAGATGAGTTGTCAAATGATATTGAAGGTGGAAATGTTCATATATTAACTACTGTCCAAATAGAGAAACTCAGTAGATATTTATTTATCGCCAGCCATGTAGCCATGAATCAATTAGTATATATCGAATCATGCACCCGAAAGATCCAGAAACAAAAAGCAAAGGAGAAAATGGCTGTTGATGGTGAGACTGTGCATGGTAATGGCGTGAAGGAAGATGGCATCAATGCTGAGCTAGGCTTTGCGGCATCTGAAGATGCAATTGTTGATTCTCTTTCAGAAAAGGCAGAAAAAGAAATTGTTTTTGGCAATTCAGGTGGGAAGAATTTAATAGGACACTGTGCACCATTTCTTTCCAAGCTTTGCAGAAATTTCAACCTAATGCATAAGTTCCCAGATCTACAAGCATCTGCAATGCTTGCTTTATGTCGTTTAATGATCATTGATGCAGATTTTTGCAATGCAAATCTTCAACTTCTTTTCACGGTTGTCGAATCTGCACCATCAGATATTGTTCGTTCCAATTGCACTATTGCTTTAGGAGATTTGGCTGTTCGTTTCCCTAATCTCTTGGAACCATGGACTGAGAATATGTATGCGAGGTTGAAGGACCCTTCGAACACTGTTAGGAAGAATGCTGTATTGGTGCTTTCTCATCTTATATTAAACGATATGATGAAGGTAAAAGGTTATATAAATGAAATGACTCTACGTTTAGAAGATGAGGATGAGAGAATATCAAACCTAGCCAAACTGTTTTTCCATGAGTTATCTAAGAAAGGAGCCAATCCCATATACAATTTACTACCAGATATATTAGGAAAACTTTCTAACCAGAATCTGCAGAGAGAATCCTTCTGCAACATTATGCAATTCTTGATTGGCTCGATCAAGAGGGATAAACAAATGGAGTCACTCGTTGAAAAGCTTTGCAATAGGTTTAGTGGAGTTTCAGATGTTAGACAGTGGGAATATATTGCATATTGTCTTTCTCAGCTTGGCTTCACTGAAAAGGGAATGAAAAAGTTGATAGATTCATTCAAGACATACGAGCACGTTGTCTCGGAGGATTCTGTAATGGAACATTTCAAGAGCATCATAAACAAGAGTAAGAAATTTGCTAAACCAGAACTCAAGTTATGCGTTGAAGAATTCGAAGAAAAACTTAACAAGGCTCATATGGAAAGGAAGGAGCAAGAAGTTACTGCTAGAAATGCCCAAGCTCATCAACAGAGGATTGGTTCTATTGAAGCTTCTTCTGTTGCAGTGAAAAATGAAGAAGAAGCTTCTGTGTCCGAAATAACTGAAGAAGAAAACATTGAAACATCTGAAGATGCTGAATCTATAAATTACAATTCAGAAGCTAAGTTGGTTGAGGCGGAAGAATCTGGTATTTCCAGTGAACTGACAGAGTCAGCAACATGTAATACTGAAATTCAATCACCCCAAGTTAAGAATGAAGGAACCTCCAAATCGCGAGTTAAGCGAAGTTCACGTAAAAGAGACATTCCTGCGCGAACTTAA 3951 41.0 MASHFIFPQTLRSLEQDSDDNRLCVQNLTEIASLRQSQLEEFVKGVSFDLSDKELFCVEEQDTFDRVYSLIREYHCLSSTCKLNIVESLRSNFSVLLPNIDSLARASLSNDGDAPVLEQIASHRNAFKIYTFFLFNIVVSEESSGGSSNNAKVTASTRKKMPRSSWNWELQRGRILNLIANSLEINISFLFGSSDPDENYLSFITKNTFSMFENPILLKDVDTKDALCRIIGACSTKYHFTTHSCASIMHLIHKYDYVVTHLADAVSGAEKKYSDGILAISLIRDVGRTNPKDYVKDTVGAENIGRFLVELADRLPKLCSTNIGLLIPHFGGESYKIRNALVGVLGKLTAKAFCDIEGEQSCKSVRLRSKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAAVAAGRLEDKSAIVRKSALQLLITMLQHNPFGPQLRMVSFEATLEQYKKKLGELEPEKSSENVESGSPFDGDIFSGDGEVDNGLTEGRAGNQEDSLTDSYPPNMEEEAVEKDNLTLDVGNMEQIRALVASLEAGLRFSTCISEVMPILVQLMASSSATDVENTILLLMRCRQFQIDGSEACLRKMLPLAFSQDKSIYEAVENAFITIYITKNPMESAKNLIQLAIDSNIGDLAALEFMIDALVSKGDISSSTISALWDFFCFNVGGTTAEQSRGALSVLCMATKSSAGIVGSHIQDIIDIGFGRWSKVDPLLARTACTAIERLSEDDKKKLLASNGSRVFDKLDSLITSSWLPEKIWYAAADKAIAAIYSIHPSPENIAANLVKTSLTSVFNGNKEDELSNDIEGGNVHILTTVQIEKLSRYLFIASHVAMNQLVYIESCTRKIQKQKAKEKMAVDGETVHGNGVKEDGINAELGFAASEDAIVDSLSEKAEKEIVFGNSGGKNLIGHCAPFLSKLCRNFNLMHKFPDLQASAMLALCRLMIIDADFCNANLQLLFTVVESAPSDIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSNTVRKNAVLVLSHLILNDMMKVKGYINEMTLRLEDEDERISNLAKLFFHELSKKGANPIYNLLPDILGKLSNQNLQRESFCNIMQFLIGSIKRDKQMESLVEKLCNRFSGVSDVRQWEYIAYCLSQLGFTEKGMKKLIDSFKTYEHVVSEDSVMEHFKSIINKSKKFAKPELKLCVEEFEEKLNKAHMERKEQEVTARNAQAHQQRIGSIEASSVAVKNEEEASVSEITEEENIETSEDAESINYNSEAKLVEAEESGISSELTESATCNTEIQSPQVKNEGTSKSRVKRSSRKRDIPART 1316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7518641 7528227 + Sed0020412.1 Sed12g1134 732090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1134 1316 Pfam non-SMC mitotic condensation complex subunit 1, N-term 80 240 IPR024324 -
Sed12g1134 1316 Gene3D - 974 1200 IPR011989 -
Sed12g1134 1316 PIRSF Condensin_D2 1 1285 IPR007673 GO:0000278(InterPro)|GO:0005634(InterPro)|GO:0030261(InterPro)
Sed12g1134 1316 Coils Coil 1041 1061 - -
Sed12g1134 1316 MobiDBLite consensus disorder prediction 1274 1297 - -
Sed12g1134 1316 FunFam Condensin complex subunit 1 287 467 - -
Sed12g1134 1316 MobiDBLite consensus disorder prediction 466 516 - -
Sed12g1134 1316 MobiDBLite consensus disorder prediction 1213 1316 - -
Sed12g1134 1316 Gene3D - 295 467 IPR011989 -
Sed12g1134 1316 Pfam non-SMC mitotic condensation complex subunit 1 980 1140 IPR032682 -
Sed12g1134 1316 Coils Coil 1191 1211 - -
Sed12g1134 1316 MobiDBLite consensus disorder prediction 1213 1227 - -
Sed12g1134 1316 SUPERFAMILY ARM repeat 305 1205 IPR016024 -
Sed12g1134 1316 PANTHER CONDENSIN 1 1305 IPR026971 GO:0000779(PANTHER)|GO:0000799(PANTHER)|GO:0007076(PANTHER)|GO:0007076(InterPro)|GO:0010032(PANTHER)|GO:0042393(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1134 K06677 - - csv:101221279 2274.97
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g291 . Blo12g00017 . . Bpe04g01135 . . . . Cmo17g00320 . . . . . . . . . . . . . . Cla06g00475 . . Cco06g0513 . Cmu06g0495 . . . Cone7ag0144 . . . Chy11g01515 . . . . . . . . . Sed12g1134 . . . Cma17g00330 . Car17g00304 . . Bhi12g02048 Tan06g2683 Cmetu04g0061 Lac11g0844 Hepe03g0098 . Lcy12g0737 . . . . . . . Lsi09g01434 . . Cme11g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009093 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31