Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1143 ATGGCGGATCCTATCTCCGGTGTTCCAGAAGTTTCCCCCGCCGGAGCCGCCGTCGGAGAAGAAGAAGTAGAGGTTGCGCCGCCTCTCTCCGAGCTTCGACGATTCGATTCATTGGATTTAGAGTCTAGAAAACTCCATAGTGATCATCCTCATCCATCCGACGCGAAGAACAAAAAATGGAGCGTGATATCACTGCTAGCGTTCCAGAGCATCGGAATCGTGTACGGCGACATCGGAACGTCGCCGCTGTACGTGTTCTCGAGCACATTCACGGACGGAATAAAGCACAACGACGACGTTTTAGGAGCTCTATCTCTCATCTTCTACACCATCACTCTCATTCCCGTTATCAAATACGTCTTCATCGTCCTCAGAGCCAACGACAACGGAGAAGGCGGAACGTTCGCGCTGTACTCTCTGATTTGTCGATACGCGAAATTAGGGGTGATTCCGAACGAACAGGTTGAGGATCGAGAGGTGTCGAATTATGAGTTGGATTTGCCGAATCCGAGACAGGTTAGGGCTTCGAAGATTCAGTTGAGGTTGGAGAAGAGCTATTTTGCGAAGCTGTTTCTTCTGTTTGCTACTATGCTTGGGACCTCCATGGTTATTGGCGATGGTGTTCTTACTCCTTGCATTTCAGTTTTATCTGCTGTGGGAGGGATCAAAGAGGCTACCCCTACAATGACGGAAGGTAAGATTGTTTGGATATCAGTAGGAATATTGGTGTGCCTGTTCATGGTTCAAAGATTTGGAACAGACAAAGTTGGCTATGCTTTTGCTCCCATAATCTTCATTTGGTTTACTTTGAATGCTGGGATCGGTGTTTACAACTTCATACACCACGATCCAACTGTCATCAAAGCCTTAAATCCAATCTACATTGTTGATTATTTCAAAAGGAACAACAAGGACGCTTGGATTTCTCTTGGTGGCATTGTTCTTTGCATTACAGGGACCGAAGCGTTGTTCGCCGACGTCGGGCATTTCAGCATCCGATCAATCCAGCTAAGCATGTCAGCAGTGACTTACCCAGCTTTAATCTGTGCATATTTAGGGCAAGCCTCGTTTCTTCGCAAACATAGTGAACTTGTTTCAGACACATTCTACAAGTCAATTCCTGGAGGATTGTATTGGCCAATGTTTGTGGTGGCAGTTTCAGCATCAATCATAGCAAGCCAAGCCATGATCTCAGGAACTTTCTCTATAATTCAACAGTCACTTTCACTTGGATGCTTCCCTAGAGTTAAAGTGGTTCATACTTCTGCTAAGTATGAAGGCCAAGTTTATGTCCCTGAGATTAATTACCTTCTTATGCTCGCTTGTGTTGGTGTCACTTTGGGCTTCAAGAACACTACCCAAATTGGCAATGCTTATGGAATAGCAGTGGTTTTTGTGATGACACTCACATCCTCCTTCCTAGTTCTGATAATGGTGATGATTTGGAAAACACACATTGTTTTCATAATGACTTACATTCTCATCATTGGTAGTGTGGAATTGATGTATCTCAGTTCAGTCCTTTACAAGTTTGACCAAGGAGGCTATCTCCCATTGGCTTTTGCTGCTGCTTTGATGACAATAATGTATGTATGGAATAGTGTGTTTAGAAAGAAGTACTTTTATGAGCTCAACCACAAAATCTCCTCAGAAAAGCTCAATCAGATTGTTAATACCACTAGCTTTAGAAGAATTCCTGGCATTGCATTGTTCTACTCTGAGCTTGTTCAAGGTATCCCACCCATCTTCAAGCATTATGTCGAGCACGTGCCCGCATTGCACTCCGTGCTCGTCTTCGTCACCATTAAATCGCTTCCTGTCAGCAAGGTTCCAGCCGACGAACGTTTCCTCTTCCGGAAAGTAGAGGCGAAGGAGATCGACGTGTTTCGTTGCGTTATCCGATACGGGTACACAGATGTGCACACAGAACAAGAATCATTCGAGAAGGTATTAATCGAAAGATTGGAGGAGTTCGTAAGAGAGCACCATAATCAATTGTCTAACGACGAAAACGGAGTCAAAGATGAGGGTGAGAAAGGATCATCATGTCGAGGAGTTGCAAAAGCATGGAAAGATGGAGTTGTTCATTTGGTTGGGGAAACTGAAGTGGTTGCTAAAAAGGGGGCTGGCTTTGGAAAGAGGATTATGATAAACTATGCATATAGCTTCTTGAAGAGGAATTTAAGGCAATCTGATCAAGTGTTTGATATTCCTCGCAGGCATATGCTCAAAGTAGGAATGACTTATGAACTTTAG 2256 44.19 MADPISGVPEVSPAGAAVGEEEVEVAPPLSELRRFDSLDLESRKLHSDHPHPSDAKNKKWSVISLLAFQSIGIVYGDIGTSPLYVFSSTFTDGIKHNDDVLGALSLIFYTITLIPVIKYVFIVLRANDNGEGGTFALYSLICRYAKLGVIPNEQVEDREVSNYELDLPNPRQVRASKIQLRLEKSYFAKLFLLFATMLGTSMVIGDGVLTPCISVLSAVGGIKEATPTMTEGKIVWISVGILVCLFMVQRFGTDKVGYAFAPIIFIWFTLNAGIGVYNFIHHDPTVIKALNPIYIVDYFKRNNKDAWISLGGIVLCITGTEALFADVGHFSIRSIQLSMSAVTYPALICAYLGQASFLRKHSELVSDTFYKSIPGGLYWPMFVVAVSASIIASQAMISGTFSIIQQSLSLGCFPRVKVVHTSAKYEGQVYVPEINYLLMLACVGVTLGFKNTTQIGNAYGIAVVFVMTLTSSFLVLIMVMIWKTHIVFIMTYILIIGSVELMYLSSVLYKFDQGGYLPLAFAAALMTIMYVWNSVFRKKYFYELNHKISSEKLNQIVNTTSFRRIPGIALFYSELVQGIPPIFKHYVEHVPALHSVLVFVTIKSLPVSKVPADERFLFRKVEAKEIDVFRCVIRYGYTDVHTEQESFEKVLIERLEEFVREHHNQLSNDENGVKDEGEKGSSCRGVAKAWKDGVVHLVGETEVVAKKGAGFGKRIMINYAYSFLKRNLRQSDQVFDIPRRHMLKVGMTYEL 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7537722 7547480 - Sed0003142.1 Sed12g1143 732099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1143 751 NCBIfam potassium uptake protein 66 750 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed12g1143 751 Pfam K+ potassium transporter integral membrane domain 66 553 IPR053951 -
Sed12g1143 751 Pfam K+ potassium transporter C-terminal domain 566 751 IPR053952 -
Sed12g1143 751 MobiDBLite consensus disorder prediction 1 25 - -
Sed12g1143 751 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 54 750 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0933 Sed-Chr2:46891338 Sed12g1143 Sed-Chr12:7537722 6.70E-224 dispersed
Sed07g0336 Sed-Chr7:2547080 Sed12g1143 Sed-Chr12:7537722 1.50E-222 dispersed
Sed09g1218 Sed-Chr9:36426336 Sed12g1143 Sed-Chr12:7537722 2.30E-295 dispersed
Sed09g1219 Sed-Chr9:36449748 Sed12g1143 Sed-Chr12:7537722 6.00E-18 dispersed
Sed09g1220 Sed-Chr9:36452953 Sed12g1143 Sed-Chr12:7537722 3.10E-260 dispersed
Sed12g1143 Sed-Chr12:7537722 Sed13g0001 Sed-Chr13:17885 5.30E-191 dispersed
Sed12g1143 Sed-Chr12:7537722 Sed12g1144 Sed-Chr12:7537722 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1143 K03549 - csv:101215797 1218.76