Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1144 ATGCTTGGGACCTCCATGGTTATTGGCGATGGTGTTCTTACTCCTTGCATTTCAGTTTTATCTGCTGTGGGAGGGATCAAAGAGGCTACCCCTACAATGACGGAAGGTAAGATTGTTTGGATATCAGTAGGAATATTGGTGTGCCTGTTCATGGTTCAAAGATTTGGAACAGACAAAGTTGGCTATGCTTTTGCTCCCATAATCTTCATTTGGTTTACTTTGAATGCTGGGATCGGTGTTTACAACTTCATACACCACGATCCAACTGTCATCAAAGCCTTAAATCCAATCTACATTGTTGATTATTTCAAAAGGAACAACAAGGACGCTTGGATTTCTCTTGGTGGCATTGTTCTTTGCATTACAGGGACCGAAGCGTTGTTCGCCGACGTCGGGCATTTCAGCATCCGATCAATCCAGCTAAGCATGTCAGCAGTGACTTACCCAGCTTTAATCTGTGCATATTTAGGGCAAGCCTCGTTTCTTCGCAAACATAGTGAACTTGTTTCAGACACATTCTACAAGTCAATTCCTGGAGGATTGTATTGGCCAATGTTTGTGGTGGCAGTTTCAGCATCAATCATAGCAAGCCAAGCCATGATCTCAGGAACTTTCTCTATAATTCAACAGTCACTTTCACTTGGATGCTTCCCTAGAGTTAAAGTGGTTCATACTTCTGCTAAGTATGAAGGCCAAGTTTATGTCCCTGAGATTAATTACCTTCTTATGCTCGCTTGTGTTGGTGTCACTTTGGGCTTCAAGAACACTACCCAAATTGGCAATGCTTATGGAATAGCAGTGGTTTTTGTGATGACACTCACATCCTCCTTCCTAGTTCTGATAATGGTGATGATTTGGAAAACACACATTGTTTTCATAATGACTTACATTCTCATCATTGGTAGTGTGGAATTGATGTATCTCAGTTCAGTCCTTTACAAGTTTGACCAAGGAGGCTATCTCCCATTGGCTTTTGCTGCTGCTTTGATGACAATAATGTATGTATGGAATAGTGTGTTTAGAAAGAAGTACTTTTATGAGCTCAACCACAAAATCTCCTCAGAAAAGCTCAATCAGATTGTTAATACCACTAGCTTTAGAAGAATTCCTGGCATTGCATTGTTCTACTCTGAGCTTGTTCAAGGTATCCCACCCATCTTCAAGCATTATGTCGAGCACGTGCCCGCATTGCACTCCGTGCTCGTCTTCGTCACCATTAAATCGCTTCCTGTCAGCAAGGTTCCAGCCGACGAACGTTTCCTCTTCCGGAAAGTAGAGGCGAAGGAGATCGACGTGTTTCGTTGCGTTATCCGATACGGGTACACAGATGTGCACACAGAACAAGAATCATTCGAGAAGGTATTAATCGAAAGATTGGAGGAGTTCGTAAGAGAGCACCATAATCAATTGTCTAACGACGAAAACGGAGTCAAAGATGAGGGTGAGAAAGGATCATCATGTCGAGGAGTTGCAAAAGCATGGAAAGATGGAGTTGTTCATTTGGTTGGGGAAACTGAAGTGGTTGCTAAAAAGGGGGCTGGCTTTGGAAAGAGGATTATGATAAACTATGCATATAGCTTCTTGAAGAGGAATTTAAGGCAATCTGATCAAGTGTTTGATATTCCTCGCAGGCATATGCTCAAAGTAGGAATGACTTATGAACTTTAG 1668 42.15 MLGTSMVIGDGVLTPCISVLSAVGGIKEATPTMTEGKIVWISVGILVCLFMVQRFGTDKVGYAFAPIIFIWFTLNAGIGVYNFIHHDPTVIKALNPIYIVDYFKRNNKDAWISLGGIVLCITGTEALFADVGHFSIRSIQLSMSAVTYPALICAYLGQASFLRKHSELVSDTFYKSIPGGLYWPMFVVAVSASIIASQAMISGTFSIIQQSLSLGCFPRVKVVHTSAKYEGQVYVPEINYLLMLACVGVTLGFKNTTQIGNAYGIAVVFVMTLTSSFLVLIMVMIWKTHIVFIMTYILIIGSVELMYLSSVLYKFDQGGYLPLAFAAALMTIMYVWNSVFRKKYFYELNHKISSEKLNQIVNTTSFRRIPGIALFYSELVQGIPPIFKHYVEHVPALHSVLVFVTIKSLPVSKVPADERFLFRKVEAKEIDVFRCVIRYGYTDVHTEQESFEKVLIERLEEFVREHHNQLSNDENGVKDEGEKGSSCRGVAKAWKDGVVHLVGETEVVAKKGAGFGKRIMINYAYSFLKRNLRQSDQVFDIPRRHMLKVGMTYEL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7537722 7547480 - Sed0003142.2 Sed12g1144 732100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1144 555 Pfam K+ potassium transporter integral membrane domain 1 357 IPR053951 -
Sed12g1144 555 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 554 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Sed12g1144 555 Pfam K+ potassium transporter C-terminal domain 370 555 IPR053952 -
Sed12g1144 555 NCBIfam potassium uptake protein 1 554 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1144 Sed-Chr12:7537722 Sed13g0001 Sed-Chr13:17885 2.30E-143 dispersed
Sed12g1143 Sed-Chr12:7537722 Sed12g1144 Sed-Chr12:7537722 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1144 K03549 - csv:101215797 948.347