Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1159 ATGGGTAGTAGTAGAACAGTGAAGATCGGTGCAGACGATATAAACAAAACGGTCAACGGGATGCCTAGCTTCGTTTCTTCGATGCCTACTGCAAATAATTCCATGGGTGCGGAGGGAAGCTCTATTCCTTCATCTCAGATCTCAGACTTAAGAACACTCGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTTCTAAAAATCCTTTGTATAATCAGATAAAGTCAAATAGTTTAGCTCTGAACAACAACATCCAGTTTGGTTCTTTAATTAAGTCACTTGGATCCACTGATGTAAATTTGGCAACTGCTATCATGGGGTCTCAATCATTGCCATTACAGAACGAATCAAATCCAAATGTGGTTTCTACATCTGCCGGTCCACGAGAAAACTGGGGAGAGTCTAACATGGCAGATACAAGTACAAGAACTGATACCTCCACAGATGACACTGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCAGCATATGATTCTAACAACAAATCGAAAGAAAAATCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGCGAGGCTGCCAGAAAAAGTCGTTTAAGGAAAAAGGCGTATGTGCAGCAGCTAGAAAGTAGCAGGTTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGCGTGCCCGTCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCGATGAACGGAAATGGGGCCCTAGCATTTGATGCAGAATATTCACGTTGGTTAGAGGAGCAGAACAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATGCACATGCGGGTGACACTGAACTTCGAACTATTGTTGATAATGCGGCTACACAATTTGACGATATTTTCAGGTTGAAAGGAATCGCAGCCAAAGCGGATGTGTTCCACATTTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGTTTTCGTTCATCTGAGATTTTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGGCTGAGCACCAAGTAGTGGGCATGTGCAACCTACAACAGTTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAGACGTTGGCCAGTGGCACGCCTGCGACGTCGGGTTCGTCCGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTTCTACGCCAGGCTGATAATCTTCGTCAGCAAACACTTCAACAAATGCATCGTATATTGACAACCCGTCAATCAGCCCGTGCGCTTCTTGCAATAAACGATTACTTTTCCCGCCTTCGAGCCCTCAGCTCTCTCTGGCTTGCACGACCCCGGGAGTGA 1407 44.99 MGSSRTVKIGADDINKTVNGMPSFVSSMPTANNSMGAEGSSIPSSQISDLRTLEQTLGFHIEDVDLSKNPLYNQIKSNSLALNNNIQFGSLIKSLGSTDVNLATAIMGSQSLPLQNESNPNVVSTSAGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSNNKSKEKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMNGNGALAFDAEYSRWLEEQNRLINELRAAVNAHAGDTELRTIVDNAATQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLAEHQVVGMCNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7691854 7698460 + Sed0025343.1 Sed12g1159 732115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1159 468 Coils Coil 202 229 - -
Sed12g1159 468 Pfam Basic region leucine zipper 179 225 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1159 468 FunFam BZIP family transcription factor 182 231 - -
Sed12g1159 468 Pfam Seed dormancy control 266 341 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed12g1159 468 MobiDBLite consensus disorder prediction 146 161 - -
Sed12g1159 468 PANTHER TRANSCRIPTION FACTOR TGA9 138 468 - -
Sed12g1159 468 MobiDBLite consensus disorder prediction 112 145 - -
Sed12g1159 468 MobiDBLite consensus disorder prediction 112 199 - -
Sed12g1159 468 Gene3D - 182 234 - -
Sed12g1159 468 SMART brlzneu 179 242 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1159 468 CDD bZIP_HBP1b-like 183 234 - -
Sed12g1159 468 ProSiteProfiles DOG1 domain profile. 248 465 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed12g1159 468 SUPERFAMILY Leucine zipper domain 183 226 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1159 468 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1159 468 MobiDBLite consensus disorder prediction 174 195 - -
Sed12g1159 468 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2665 Sed-Chr4:39068829 Sed12g1159 Sed-Chr12:7691854 2.90E-133 dispersed
Sed04g2666 Sed-Chr4:39068829 Sed12g1159 Sed-Chr12:7691854 2.10E-134 dispersed
Sed11g1626 Sed-Chr11:31597841 Sed12g1159 Sed-Chr12:7691854 1.60E-118 dispersed
Sed12g1159 Sed-Chr12:7691854 Sed12g1268 Sed-Chr12:9165658 4.70E-89 dispersed
Sed12g1159 Sed-Chr12:7691854 Sed12g1160 Sed-Chr12:7691854 2.30E-192 tandem
Sed12g1159 Sed-Chr12:7691854 Sed02g0803 Sed-Chr2:45695200 2.10E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40181 PF14144 DOG1 3.90E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1159 K14431 - csv:101219149 806.594