Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1160 ATGGGGTCTCAATCATTGCCATTACAGAACGAATCAAATCCAAATGTGGTTTCTACATCTGCCGGTCCACGAGAAAACTGGGGAGAGTCTAACATGGCAGATACAAGTACAAGAACTGATACCTCCACAGATGACACTGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCAGCATATGATTCTAACAACAAATCGAAAGAAAAATCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGCGAGGCTGCCAGAAAAAGTCGTTTAAGGAAAAAGGCGTATGTGCAGCAGCTAGAAAGTAGCAGGTTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGCGTGCCCGTCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCGATGAACGGAAATGGGGCCCTAGCATTTGATGCAGAATATTCACGTTGGTTAGAGGAGCAGAACAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATGCACATGCGGGTGACACTGAACTTCGAACTATTGTTGATAATGCGGCTACACAATTTGACGATATTTTCAGGTTGAAAGGAATCGCAGCCAAAGCGGATGTGTTCCACATTTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGTTTTCGTTCATCTGAGATTTTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGGCTGAGCACCAAGTAGTGGGCATGTGCAACCTACAACAGTTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAGACGTTGGCCAGTGGCACGCCTGCGACGTCGGGTTCGTCCGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTTCTACGCCAGGCTGATAATCTTCGTCAGCAAACACTTCAACAAATGCATCGTATATTGACAACCCGTCAATCAGCCCGTGCGCTTCTTGCAATAAACGATTACTTTTCCCGCCTTCGAGCCCTCAGCTCTCTCTGGCTTGCACGACCCCGGGAGTGA 1089 46.56 MGSQSLPLQNESNPNVVSTSAGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSNNKSKEKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMNGNGALAFDAEYSRWLEEQNRLINELRAAVNAHAGDTELRTIVDNAATQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLAEHQVVGMCNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7691854 7698460 + Sed0025343.2 Sed12g1160 732116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1160 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 80 95 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1160 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 75 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1160 362 SMART brlzneu 73 136 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1160 362 PANTHER TRANSCRIPTION FACTOR TGA9 35 362 - -
Sed12g1160 362 MobiDBLite consensus disorder prediction 1 93 - -
Sed12g1160 362 MobiDBLite consensus disorder prediction 40 55 - -
Sed12g1160 362 MobiDBLite consensus disorder prediction 1 39 - -
Sed12g1160 362 Gene3D - 76 128 - -
Sed12g1160 362 SUPERFAMILY Leucine zipper domain 77 120 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1160 362 Pfam Seed dormancy control 160 235 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed12g1160 362 MobiDBLite consensus disorder prediction 68 89 - -
Sed12g1160 362 Pfam Basic region leucine zipper 73 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1160 362 Coils Coil 96 123 - -
Sed12g1160 362 ProSiteProfiles DOG1 domain profile. 142 359 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed12g1160 362 FunFam BZIP family transcription factor 76 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0803 Sed-Chr2:45695200 Sed12g1160 Sed-Chr12:7691854 2.30E-152 dispersed
Sed12g1160 Sed-Chr12:7691854 Sed12g1268 Sed-Chr12:9165658 3.70E-89 dispersed
Sed12g1159 Sed-Chr12:7691854 Sed12g1160 Sed-Chr12:7691854 2.30E-192 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40182 PF14144 DOG1 2.60E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1160 K14431 - csv:101219149 628.246