Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1160 | ATGGGGTCTCAATCATTGCCATTACAGAACGAATCAAATCCAAATGTGGTTTCTACATCTGCCGGTCCACGAGAAAACTGGGGAGAGTCTAACATGGCAGATACAAGTACAAGAACTGATACCTCCACAGATGACACTGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCAGCATATGATTCTAACAACAAATCGAAAGAAAAATCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGCGAGGCTGCCAGAAAAAGTCGTTTAAGGAAAAAGGCGTATGTGCAGCAGCTAGAAAGTAGCAGGTTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGCGTGCCCGTCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCGATGAACGGAAATGGGGCCCTAGCATTTGATGCAGAATATTCACGTTGGTTAGAGGAGCAGAACAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATGCACATGCGGGTGACACTGAACTTCGAACTATTGTTGATAATGCGGCTACACAATTTGACGATATTTTCAGGTTGAAAGGAATCGCAGCCAAAGCGGATGTGTTCCACATTTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGTTTTCGTTCATCTGAGATTTTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGGCTGAGCACCAAGTAGTGGGCATGTGCAACCTACAACAGTTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAGACGTTGGCCAGTGGCACGCCTGCGACGTCGGGTTCGTCCGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTTCTACGCCAGGCTGATAATCTTCGTCAGCAAACACTTCAACAAATGCATCGTATATTGACAACCCGTCAATCAGCCCGTGCGCTTCTTGCAATAAACGATTACTTTTCCCGCCTTCGAGCCCTCAGCTCTCTCTGGCTTGCACGACCCCGGGAGTGA | 1089 | 46.56 | MGSQSLPLQNESNPNVVSTSAGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSNNKSKEKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMNGNGALAFDAEYSRWLEEQNRLINELRAAVNAHAGDTELRTIVDNAATQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLAEHQVVGMCNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 7691854 | 7698460 | + | Sed0025343.2 | Sed12g1160 | 732116 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1160 | 362 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 80 | 95 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1160 | 362 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 75 | 119 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1160 | 362 | SMART | brlzneu | 73 | 136 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1160 | 362 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 35 | 362 | - | - | |
Sed12g1160 | 362 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
Sed12g1160 | 362 | MobiDBLite | consensus disorder prediction | 40 | 55 | - | - | |
Sed12g1160 | 362 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Sed12g1160 | 362 | Gene3D | - | 76 | 128 | - | - | |
Sed12g1160 | 362 | SUPERFAMILY | Leucine zipper domain | 77 | 120 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1160 | 362 | Pfam | Seed dormancy control | 160 | 235 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed12g1160 | 362 | MobiDBLite | consensus disorder prediction | 68 | 89 | - | - | |
Sed12g1160 | 362 | Pfam | Basic region leucine zipper | 73 | 119 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g1160 | 362 | Coils | Coil | 96 | 123 | - | - | |
Sed12g1160 | 362 | ProSiteProfiles | DOG1 domain profile. | 142 | 359 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Sed12g1160 | 362 | FunFam | BZIP family transcription factor | 76 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0803 | Sed-Chr2:45695200 | Sed12g1160 | Sed-Chr12:7691854 | 2.30E-152 | dispersed | |
Sed12g1160 | Sed-Chr12:7691854 | Sed12g1268 | Sed-Chr12:9165658 | 3.70E-89 | dispersed | |
Sed12g1159 | Sed-Chr12:7691854 | Sed12g1160 | Sed-Chr12:7691854 | 2.30E-192 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40182 | PF14144 | DOG1 | 2.60E-29 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1160 | K14431 | - | csv:101219149 | 628.246 |