Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1168 ATGGGGCTGCAAATTGTGGATCCAAATACCTGCATCAGGGGCTGCTGCTCCAGCAAGTTCATTCCTCTTCATCTTCAACCTTCCGCATTTTCGCTTCTCTCCCCAATCGCCCGAGGGGCCGAGAGTACTGTTTACGAGGGACGGTTGGATGGTGAAAGAGTTGCCGTGAAGAAGCCCGTCCTGTCTACTTCTGAGGATTTGGACAAGTTTCACAAGGAGCTTCAGTTGCTATGCGAATTAGATCATCCAGGCATAGTAAAGCTGGTTGCAGCAAATGCGAAGCCACCGAACTACATGTTTTTCTTTGAATTCTATGAGCCTCCAAATCTTGCAGAGAAATTGCATGCCCAAGAATGGAATCCAAGTAACAGTCAGGTCCTCACGATCACTCTAGAGTTAGCGAAAGCTTTGCAATATTTACACAACTTGGGGATTGTACATAGGGATGTTAAACCAGCAAATGTTCTTCTTGACAAAGATTTACGTCCATACTTGGCTGATTTTGGTTTAGCAGTACACCGGAAACATCTGAAAGAAACATCTGCAGAAAACTGGAAGTCATCGGGGAAGCCAACAGGTGGTTTCTATAAGAAAAACATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAAGAAGGAAATACATACAGACTTATCAGATGTCTACAGCTTTGGCATCTTAATGAATGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGTACTGAAGCCCAGGCCCACACTGTACTAGAAATGAATTATACCGAGCAGCTGCTTACCGCAGCTATTGTTTCAGATGGCTTGCGGCCTGCTCTTCCTAGTGATGAGGCTGGCACACCATCAAGGTTGTTGTCACTTATACGGAGGTGCTGGGATGCAAATCCTAAAAATAGACCATCTTTCTCTGTTATAGTTATGGAATTGGAGTCAACTTGGGAGGACATAAAGGGTTTAGAATCTGCCACCCCTATAAATCCCGATTTACATGGCGGTCTTAGCGATGCTAATGAAAATGATTATGCATATCGAGAAGATATCAATTGGTCAAATCAGGGTGAACATTTTTCTCAGAAGGCTTTTGATGCAGATAGTTGTGGTACGAGTGTTTGGCTTGATTCTTCTACTAATCATTTGGCATACCGCCCAATACTTTCTTGGGGATCCTTTTCCACTTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTTCTTTTGCCTCACGCGTGCAATGAAGAAGACATCCATGTCTTTGGGATCTTTGACGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCCATTCCTGGATTCTTGCTAACATCAAGTTCCTCGAAAAGTCCTGCGGATGCATTAATGGAAGCATTTGTAAAAACAGATGTTGAGTTTAGAAAAGAACTAGACTTTTTTCGCAAATCCAAGAATGTTAAACAGAAAAACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTTAGAGACAGACTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGGTGGCAATCCCATTGTTTTAAGTAAGGATCATGTTGCTAGTTGTCTCGAGGAGAGAGAGCGTGTTATCAGTGCTGGGGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGCTCTTCAGGTCACTCGATCAATTGGCGACGATGATCTCAAACCAGCTGTGACTGCAGAACCCGAAATAATAGAAACTGTTTTGACATCACAGGATGATTACATGGTGATGGCTAGTGATGGACTATGGGATGTCCTCAGCAATGCTGAGGTCGTCGCGATCATCAGGGACACCGTCAAAGAACCAGGAATGTGCTCGAAGCGACTTGCAACAGAAGCAGTAGCTCGGGGCAGCAGTGATAACATCACGATAATTGTTGTATTTTTGCATCCAGTATCTACAGTAGAGAGGATTTATTAA 1968 44.31 MGLQIVDPNTCIRGCCSSKFIPLHLQPSAFSLLSPIARGAESTVYEGRLDGERVAVKKPVLSTSEDLDKFHKELQLLCELDHPGIVKLVAANAKPPNYMFFFEFYEPPNLAEKLHAQEWNPSNSQVLTITLELAKALQYLHNLGIVHRDVKPANVLLDKDLRPYLADFGLAVHRKHLKETSAENWKSSGKPTGGFYKKNMVGTLIYMAPEILKKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPSDEAGTPSRLLSLIRRCWDANPKNRPSFSVIVMELESTWEDIKGLESATPINPDLHGGLSDANENDYAYREDINWSNQGEHFSQKAFDADSCGTSVWLDSSTNHLAYRPILSWGSFSTCGRRETMEDSHFLLPHACNEEDIHVFGIFDGHRGAAAAEFSAQAIPGFLLTSSSSKSPADALMEAFVKTDVEFRKELDFFRKSKNVKQKNWHPGCTAVVALIVRDRLFVANAGDCRTILCRGGNPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEIIETVLTSQDDYMVMASDGLWDVLSNAEVVAIIRDTVKEPGMCSKRLATEAVARGSSDNITIIVVFLHPVSTVERIY 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7766902 7775633 - Sed0010522.1 Sed12g1168 732124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1168 655 SMART PP2C_SIG_2 403 645 IPR001932 -
Sed12g1168 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1168 655 ProSiteProfiles Protein kinase domain profile. 30 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1168 655 SMART serkin_6 30 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1168 655 SUPERFAMILY PP2C-like 379 647 IPR036457 -
Sed12g1168 655 ProSiteProfiles PPM-type phosphatase domain profile. 388 645 IPR001932 -
Sed12g1168 655 SMART PP2C_4 378 643 IPR001932 -
Sed12g1168 655 PANTHER PROTEIN PHOSPHATASE 354 644 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed12g1168 655 Gene3D Transferase(Phosphotransferase) domain 1 17 326 - -
Sed12g1168 655 SUPERFAMILY Protein kinase-like (PK-like) 23 324 IPR011009 -
Sed12g1168 655 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 379 649 - -
Sed12g1168 655 Pfam Protein kinase domain 33 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1168 655 CDD PP2Cc 390 645 IPR001932 -
Sed12g1168 655 Gene3D - 378 650 IPR036457 -
Sed12g1168 655 Pfam Protein phosphatase 2C 392 638 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1168 Sed-Chr12:7766902 Sed13g1943 Sed-Chr13:24319361 1.60E-42 dispersed
Sed14g1623 Sed-Chr14:24410889 Sed12g1168 Sed-Chr12:7766902 1.00E-21 dispersed
Sed12g1168 Sed-Chr12:7766902 Sed13g1941 Sed-Chr13:24319361 1.60E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79992 PF00069 Pkinase 6.20E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1168 - - - 0.0