Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1169 ATGGGGTTCATAGAATGCCTTGCACGTTTCTTTCAAAATGCAAAGCCTTACATCGCAGTCATCTCACTCCAATTCGGCTACGCCGGGATGAACATCATCTCCGTCGTCTCCCTCAACCGCGGTATGAGCCACTACGTCCTCGTCGTCTATCGCCATGCCTTTGCCACCCTTGCCGTGGCTCCCTTTGCTCTTATTCTCGAGTGGAAAGTAAGACCCAAGATTACATGGAAGATTTTCATTCAGATGTTTGGTCTTGCTCTTCTTGGCCCACTGATTGATCAAAACTTCTACTACGTGGGGCTGAAAATGACATCCCCAACTTTCTCTTGTGCCATAAGCAACATGCTTCCTTCAATGACATTCGTCATGGCGGTCCTTTGCAGGATGGAGAAGTTAGACTTAAGGAAAGTGAGATGCCAAGCCAAGTTGTTTGGAACAATAGTGACGGTCATGGGAGCGATGTTGATGACACTTTACAAAGGAAGTGTCATCAACTTCTTCTCAACAGCGCACAGCCAGCATCCGAACTCGGCACCTGCAGCGGATGTCCATCACAACGAGGGAGAGTTCATCAAAGGGTCCATTTTGCTCATCATGGCCACTCTGGCTTGGGCAGGCTTCTTCATTCTTCAAGTCATAACCTTGAGAAAATACACAGCCCATCTTTCACTCACCGCCATGGTTTGCTTCTTGGGAACTCTTCAGGCCATCGTCGTCACCCTTGTCATGGAACGCCGCCCCTCCGCTTGGGCCATCGGCTGGGACATTAACCTTCTCGCTGCCGCTTATGCCGGAGTTGTGACATCTGGGGTGGCATATTATGTGCAAGGTTTGGTCATGAAGACAAGAGGGCCAGTTTTTGTTACAGCTTTTAGCCCTTTGATGATGGTCATTGTTGCTTTCATGGGTTCTATCATTTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGAGCAGTGTTGATTGTAATAGGGCTATACTGTGTTTTGTGGGGGAAGTACAAGGAAGGCAAAGAGAAGGAATTAGTTGGAGAGGATATTATAGAATTACCAGTGAAAGATGGAGAAATATTGCCTGTAATAAATGAAGGCATTGAGGCAATAATACAAAAGAAAGAGGCTAATTTGGTCATTACAATCCCACCCATGGCTGCTTCTAACAATGGAGATCAAGAACCTTCAAGGAAATAA 1191 46.26 MGFIECLARFFQNAKPYIAVISLQFGYAGMNIISVVSLNRGMSHYVLVVYRHAFATLAVAPFALILEWKVRPKITWKIFIQMFGLALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVLCRMEKLDLRKVRCQAKLFGTIVTVMGAMLMTLYKGSVINFFSTAHSQHPNSAPAADVHHNEGEFIKGSILLIMATLAWAGFFILQVITLRKYTAHLSLTAMVCFLGTLQAIVVTLVMERRPSAWAIGWDINLLAAAYAGVVTSGVAYYVQGLVMKTRGPVFVTAFSPLMMVIVAFMGSIILAEKIYVGGIIGAVLIVIGLYCVLWGKYKEGKEKELVGEDIIELPVKDGEILPVINEGIEAIIQKKEANLVITIPPMAASNNGDQEPSRK 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7782269 7786101 - Sed0018494.1 Sed12g1169 732125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1169 396 PANTHER WAT1-RELATED PROTEIN 18 341 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed12g1169 396 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020(InterPro)
Sed12g1169 396 Pfam EamA-like transporter family 19 157 IPR000620 GO:0016020(InterPro)
Sed12g1169 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Sed12g1169 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1698 Sed-Chr11:32220777 Sed12g1169 Sed-Chr12:7782269 6.30E-60 dispersed
Sed12g1169 Sed-Chr12:7782269 Sed12g1459 Sed-Chr12:14680027 3.80E-95 dispersed
Sed12g1169 Sed-Chr12:7782269 Sed14g0046 Sed-Chr14:593769 3.30E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1169 - - - 0.0