Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g1171 | ATGGACAATGTTGTGGGGGAGATCAACACCAGGCTTTTGCCTGTCTTGGGAAACGCTTCTTTCACCGCTCAGCCTGTGGACTTGCAGGATGTTTTGGAGCGCTTGGCGTTTGATAATGTTTGTAAACTGGCGTTCCATTTCGATCCTGCCTGTCTTGCTGGGGATGCTACTGCCGGATCCCAGTTCATGCACGCCTTTGAACGCGCCGCCACTCTCAGCTCCGCCAGATTCATGTATGCTTTTCCTGTTTTCTACAAAGTGAAGAAATTTTTCAACATGGGATCAGAGAGAACCATGAAGGAATCCATAGCCACAGTTCACAAATTTGCAGAAGACATCATAAGCTCAAGAATGAAAGAGAAGAAAACAACCCTTATAAAAAATGACCAAGATTTACTATCCCGGTTCATGGGAGACCAAGACAATAACTCCCCCGAATTCCTCCGAGACATAATCATAAGCTTCATCCTCGCCGGCCGAGACACGACATCCTCCGCTCTAACATGGTTCTTTTGGATCTTATCCTCCCGACCCAACGTCAAACAAAACATCCTCAAGGAACTCGAAACAATCCGGTCGAGAACGGGCAAGCAAATCGGAGAAACATACAGCTTCGACGAACTTCGAGACATGCACTACCTACAAGCATCACTCTCTGAGACTCTTCGGTTGTACCCACCAGTGCCCGTGGACACGAAAGTGTGTCTTAAAGACGACGTCTTGCCCGACGGAACATTTATTAGGAAGGATTGGTTTGTGACGTACCATACATATGCAATGGGAAGAATGGAGAGCATATGGGGGGAAAACTATGGGGAGTTTTTGCCAGAGAGGTGGTTGGAGAATGGGGTTTGCCGGATGGAGAGCCCGTTTCGGTTCCCGATATTTCACGCGGGGCCGAGGATGTGTTTGGGGAAGGATATGGCCTATATTCAGATGAAGTGCATAGCAGCAGCTGTGATAGAGAAGTTTGATGTGGAAATGGTGGAGAAGGAGAAAACTCCAAAGTATTTGTTGTCTTTGACGTTGAGGATGTTGAATGGATTGCAAGTGATGATCAAAAAGAGAGAGACATGA | 1077 | 47.08 | MDNVVGEINTRLLPVLGNASFTAQPVDLQDVLERLAFDNVCKLAFHFDPACLAGDATAGSQFMHAFERAATLSSARFMYAFPVFYKVKKFFNMGSERTMKESIATVHKFAEDIISSRMKEKKTTLIKNDQDLLSRFMGDQDNNSPEFLRDIIISFILAGRDTTSSALTWFFWILSSRPNVKQNILKELETIRSRTGKQIGETYSFDELRDMHYLQASLSETLRLYPPVPVDTKVCLKDDVLPDGTFIRKDWFVTYHTYAMGRMESIWGENYGEFLPERWLENGVCRMESPFRFPIFHAGPRMCLGKDMAYIQMKCIAAAVIEKFDVEMVEKEKTPKYLLSLTLRMLNGLQVMIKKRET | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 7820742 | 7823921 | + | Sed0003344.1 | Sed12g1171 | 732127 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g1171 | 358 | SUPERFAMILY | Cytochrome P450 | 8 | 356 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 296 | 305 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed12g1171 | 358 | Pfam | Cytochrome P450 | 11 | 337 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | PRINTS | P450 superfamily signature | 158 | 175 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | PRINTS | P450 superfamily signature | 216 | 227 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | PRINTS | P450 superfamily signature | 294 | 303 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | PRINTS | P450 superfamily signature | 303 | 314 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | Gene3D | Cytochrome P450 | 1 | 358 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | PANTHER | CYTOCHROME P450 | 5 | 349 | - | - | |
| Sed12g1171 | 358 | CDD | CYP86A | 1 | 349 | - | - | |
| Sed12g1171 | 358 | PRINTS | E-class P450 group I signature | 147 | 164 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | PRINTS | E-class P450 group I signature | 215 | 233 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | PRINTS | E-class P450 group I signature | 303 | 326 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | PRINTS | E-class P450 group I signature | 167 | 193 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g1171 | 358 | PRINTS | E-class P450 group I signature | 293 | 303 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed12g1171 | Sed-Chr12:7820742 | Sed12g2502 | Sed-Chr12:34536214 | 5.80E-79 | dispersed | |
| Sed12g1171 | Sed-Chr12:7820742 | Sed08g0036 | Sed-Chr8:169980 | 6.90E-80 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g1171 | - | - | - | 0.0 |