Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1174 ATGAGGGAACATAATTCAAATCGGTTCTCAAAATGGGAAGAAAAGCTTCCTTCTCCGGATGAATTAACCCCTCTTTCACAAACCCTAATCACTCATAATCTAGCCATCGCATTTGACATCACAAATCCAAATATTTCCATCAGCAACACCCACCCACCGCCGCCGCAGAGTTCAGCCGATTATGAAGATTCCGGCGCCGGCGACGAATCTGCGAAAACCCTGAAGCGGCCGCGACTGGTCTGGACTCCACAGCTCCACAAGCGATTCGTCGACGCCGTCGCCCATTTGGGTATTAAAAACGCCGTCCCTAAAACCATAATGCAGTTTATGAGCGTCGATGGGTTAACTCGTGAAAATGTTGCCAGCCATTTGCAGAAATACCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCAGCAGCAGTGGCGGCGGAGCTCACGGCGGCGCCGGGTTTGTTTCAGATTCCGCCGCTGATTGTTTGTTCGCCAGTTCCCCTGTTCCCCCGCATTTTCTTGCGAATTCAGACCACTTCTTGCAGCGCCACCACCCAATGGCCGCCGTCGCCGCCGTTCACCACCACCGGCAGGTGGCCTATTTTGGGTCGCCGCCTAATGGGCAGTTTGAGAATCCGTTTTTGGCTCGGCCCATTCACCGGATTGGGTCGCCCGTAAATACTCCGGCGATGAATTACGGTGAGGATTTGGATTCCGGTGAGGAAGGGAGGAAAGTTCTTACTCTTTTCCCCACCGGTAATGATTAA 759 52.57 MREHNSNRFSKWEEKLPSPDELTPLSQTLITHNLAIAFDITNPNISISNTHPPPPQSSADYEDSGAGDESAKTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQFMSVDGLTRENVASHLQKYRLYLKRMQGISSSSGGGAHGGAGFVSDSAADCLFASSPVPPHFLANSDHFLQRHHPMAAVAAVHHHRQVAYFGSPPNGQFENPFLARPIHRIGSPVNTPAMNYGEDLDSGEEGRKVLTLFPTGND 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7835665 7836743 + Sed0020118.1 Sed12g1174 732130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1174 252 MobiDBLite consensus disorder prediction 45 75 - -
Sed12g1174 252 Gene3D - 73 135 - -
Sed12g1174 252 SUPERFAMILY Homeodomain-like 73 133 IPR009057 -
Sed12g1174 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 132 IPR017930 -
Sed12g1174 252 FunFam Two-component response regulator 72 135 - -
Sed12g1174 252 MobiDBLite consensus disorder prediction 1 18 - -
Sed12g1174 252 MobiDBLite consensus disorder prediction 1 23 - -
Sed12g1174 252 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 191 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1174 252 Pfam Myb-like DNA-binding domain 79 128 IPR001005 -
Sed12g1174 252 NCBIfam myb-like DNA-binding domain, SHAQKYF class 77 129 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1174 Sed-Chr12:7835665 Sed14g0045 Sed-Chr14:564554 9.70E-81 dispersed
Sed12g1174 Sed-Chr12:7835665 Sed02g0794 Sed-Chr2:45622012 1.30E-85 wgd
Sed12g1174 Sed-Chr12:7835665 Sed03g2144 Sed-Chr3:15552114 2.00E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40183 PF00249 Myb_DNA-binding 2.60E-08 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1174 - - - 0.0