Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1226 ATGAATAACTTGACTGTTGAAACAGAAGATGCATTTTCCAGTTTGCTCGAGCTTGCTGCAAATGATGACATTGATGCCTTTAAGAGATCGATTGAGCGCGACCCTTCTGGTATTGATGAAATTGGTTTGTGGTATGGCCGATTGCGATGCTCGAAGCAGATGACTAGTGAGCAACGGACACCTTTAATGGTTGCTGCTACTTATGGTAGCATTGAGGTTCTGAAACTCATTCTTTCGCTTTCTTGTGCTGATGTTAACCGTGCTGCCGGTCTGGACAGAAGCACCGCCCTTCATTGTGCAGCTGCAGGTGGGGCTGCAAATGCTGTAGATATTCTGAAACGGCTCTTAGCTGCTGGTGCTGATCCTAATATGGTGGACGGGAATGGACATCGGCCTATAGATGTGATTGTTGTTTCCCTAAGGCATGCCGAGTTCAAATCAATCCTTACAGAACTTCTTAAAACAAATGGTTTGTCTGGTGAAGGAAATCTTGATTCTTTGATTGGTGCTAGTAATTCACATTCTCCTCGCCCTTTGTCCCCTCTCAATGCCCCTTCTTCTGTATCGGAGTTTGTTTCTTCTCCAACACAGTTGAAACATACTGATTTTCCTATGTATTCAGCAGCTGAGAAGAAAGAATACCTTGTTGATCCTTCTCTCCCAGACATAAAGAACAGCATCTATTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTCCGGCCCTGCTCACGGGCTTACTCTCATGATTGGACGGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCCAGGAGGAGGGATCCAAGGAAGTTCCATTATAGCTGTGTACCCTGCCCTGATTTTCGGAAGGGTGCTTGCAGGCGAGGAGATATGTGTGAGTATGCTCATGGGGTGTTTGAGTGCTGGCTGCATCCAGCACAATATCGGACCCGCCTTTGCAAAGATGGTACAAATTGCTCAAGGAGAGTTTGCTTTTTTGCACACATGACTGAGGAATTGCGACCACTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCGCGTTCATGCACTTCTGGGGCTTCTGCTATGGATTATAATACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCTGTCCCTGTGATGTCCCCATCACCGTTCAATCCTCTTATGTCTCCCTCTGGCAATGGCATGTCTCACTCGTCCATGGCTTGGCCTCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATGCAATCCAGCCGTCTAAGGTCTTCTTTGAGTGCAAGAAATATTCCTGTTGAAGACTTTGATTATCTGAGCGAATTTGATCTGCAACAACAGCAGCTCCTTAATGACTTGAATTGTCTTTCTCAACCACCATTAAATTCAAATTCATTGAGCCGTTCTGGTCGGCTGAAAATTATGACCCCTTCAAATCTCGATGATCTCTTCTCGGCTGAAAGTTCGTCTCCCAGATACTCTGATCAAGCTTTGGCTTCTGCTGTTTTCTCCCCTACACACAAATCAGCTGTTATCAATCAATTTCAGCAGCAACAGAATATGTTGTCGCCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCATCCTTTATTGCAGGCCTCTTTTGGGGTTCCATCATCTGGGAGGATGTCCCCTCGGAACATGGAACCAATCTCTCCAATGGGCTCTCGCTTGTCCTTGTTAGCTCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCGAGGGAACTTGGTGCAAATTCTGCTGCTGCTGTTGGTTCCCCTTCAAGTTCTTGGTCTAAATGGGGGCCACCTTCTAATGGAAGGCCTGATTGGGCAGTCAATGCAGATGAAATGGGTAAACTTCGGCGATCATCATCATTTGAGCTCGGGAACAATGGAGAAGAGCCAGATCTATCATGGGTTCAATCACTCGTAAAAGAATCACCAACTGAGATAAAAGAAAAGCACGCTCATCCCAACTTGGGTGGCGAAAGTTTTATCTCTTCTGGTGAGGGTTCTAACATGAACTCTCGAATGGAGTCAGTTGATCATGCTGCATTGGGAGCATGGCTTGAACAAATGCAGCTCGACCATCTCGTCGCGCAACAAAACTGA 2115 45.91 MNNLTVETEDAFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRCSKQMTSEQRTPLMVAATYGSIEVLKLILSLSCADVNRAAGLDRSTALHCAAAGGAANAVDILKRLLAAGADPNMVDGNGHRPIDVIVVSLRHAEFKSILTELLKTNGLSGEGNLDSLIGASNSHSPRPLSPLNAPSSVSEFVSSPTQLKHTDFPMYSAAEKKEYLVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHMTEELRPLYVSTGSAVPSPRSCTSGASAMDYNTVMNLLPGSPSSVPVMSPSPFNPLMSPSGNGMSHSSMAWPQPNVPALHLPGSNMQSSRLRSSLSARNIPVEDFDYLSEFDLQQQQLLNDLNCLSQPPLNSNSLSRSGRLKIMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNMEPISPMGSRLSLLAQREKQQQFRSLSSRELGANSAAAVGSPSSSWSKWGPPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKHAHPNLGGESFISSGEGSNMNSRMESVDHAALGAWLEQMQLDHLVAQQN 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8602749 8607300 + Sed0011049.1 Sed12g1226 732182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1226 704 PANTHER UNKEMPT FAMILY MEMBER 51 649 IPR045234 -
Sed12g1226 704 MobiDBLite consensus disorder prediction 568 603 - -
Sed12g1226 704 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Sed12g1226 704 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Sed12g1226 704 MobiDBLite consensus disorder prediction 169 188 - -
Sed12g1226 704 MobiDBLite consensus disorder prediction 652 677 - -
Sed12g1226 704 Gene3D - 8 157 IPR036770 -
Sed12g1226 704 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Sed12g1226 704 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Sed12g1226 704 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Sed12g1226 704 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Sed12g1226 704 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 297 IPR000571 GO:0046872(InterPro)
Sed12g1226 704 SUPERFAMILY Ankyrin repeat 5 149 IPR036770 -
Sed12g1226 704 MobiDBLite consensus disorder prediction 568 612 - -
Sed12g1226 704 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Sed12g1226 704 Gene3D - 274 335 - -
Sed12g1226 704 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Sed12g1226 704 Pfam Ankyrin repeats (3 copies) 53 126 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2538 Sed-Chr4:38201111 Sed12g1226 Sed-Chr12:8602749 1.90E-238 dispersed
Sed05g1341 Sed-Chr5:26201561 Sed12g1226 Sed-Chr12:8602749 2.50E-238 dispersed
Sed05g3774 Sed-Chr5:45496311 Sed12g1226 Sed-Chr12:8602749 2.50E-126 dispersed
Sed07g2572 Sed-Chr7:41300520 Sed12g1226 Sed-Chr12:8602749 1.90E-126 dispersed
Sed12g1226 Sed-Chr12:8602749 Sed12g1796 Sed-Chr12:29019216 1.00E-50 dispersed
Sed12g1226 Sed-Chr12:8602749 Sed02g0305 Sed-Chr2:39351250 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40193 PF12796 Ank_2 3.30E-08 CL0465 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1226 - - - 0.0